run_shapley_contrib_analysis: Calculates contributions to variance using permutation/subset...

In borenstein-lab/mimosa2: Model-based Integration of Metabolite Observations and Species Abundances

Calculates contributions to variance using permutation/subset Shapley analysis for regression fits

Description

Calculates contributions to variance using permutation/subset Shapley analysis for regression fits

Usage

run_shapley_contrib_analysis(
  species_cmps,
  mets_melt,
  config_table,
  nperm = 15000,
  signif_threshold = 0.01,
  return_perm = F
)

Arguments

species_cmps	Table of species contributions (without residuals)
mets_melt	Table of metabolite concentrations
config_table	Configuration table including model-fitting settings
nperm	Number of permutations per decomposition
signif_threshold	Will only analyze models with a p-value below this threshold
return_perm	Whether to return full table of permutation results

Value

Data table of variance shares by each species in the original table for each metabolite

Examples

run_shapley_contrib_analysis(species_cmps)

borenstein-lab/mimosa2 documentation built on Dec. 19, 2024, 12:44 a.m.