estimateCN | R Documentation |
This function calculates ratio between observed and expected number of reads in localized genomic regions as CN estimates.
estimateCN(frags, regions, zlim = 3.291)
frags |
A |
regions |
A |
zlim |
The number of stdev that the deltaW must pass the peakTh (ensures only significantly higher peaks are considered). |
A GRanges-class
object containing submitted regions with an extra metacolumn CN.estim
.
David Porubsky
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