getDisjointOverlaps: Function to group overlapping ranges such that common range...

In daewoooo/primatR: What the Package Does (TODO)

Function to group overlapping ranges such that common range shared across group of ranges meets required percentage threshold (percTh).

Description

Function to group overlapping ranges such that common range shared across group of ranges meets required percentage threshold (percTh).

Usage

getDisjointOverlaps(gr, percTh = 50, weighted = FALSE)

Arguments

gr	A GRanges-class object.
percTh	A percentage threshold for a required overlap.
weighted	Set to TRUE if each overlapping group of ranges should be weighted based on its size and number of ranges in each group.

Value

A GRanges-class object with extra meta-columns (idx, perc.overlap, weight, group & sub.group).

Author(s)

David Porubsky

daewoooo/primatR documentation built on Oct. 22, 2024, 9:41 p.m.