Files in daewoooo/primatR
What the Package Does (TODO)
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/bam2GRanges.R
R/bam2stat.R
R/cutISSreads.R
R/estimateCN.R
R/export.R
R/exportBedGraph.R
R/genotypeRegions.R
R/getDisjointOverlaps.R
R/getReciprocalOverlaps.R
R/getSegDupOverlaps.R
R/getTransChromFusions.R
R/hotspotter.R
R/import.R
R/permTest.R
R/plotting.R
R/processHICdata.R
R/processReadLinks.R
R/randomizeRanges.R
R/range2rangeDistance.R
R/readPairsAsLinks.R
R/removeRanges.R
R/reportOverlapBases.R
R/subtractRegions.R
R/synchronizeReadDirRegion.R
R/undocumentedFunctions.R
R/utils.R
README.md
man/bam2GRanges.Rd
man/bam2stat.Rd
man/basesPerGenotypePerChr.Rd
man/collapseBins.Rd
man/collapseOverlaps.Rd
man/countProb.Rd
man/countUniqueReadIDs.Rd
man/coveragePerRegion.Rd
man/cutISSreads.Rd
man/estimateCN.Rd
man/eventsPerChrSizeScatter.Rd
man/exportBedGraph.Rd
man/exportINVcalls.Rd
man/fragments2UCSC.Rd
man/genomewideRangesIdeo.Rd
man/genotypeRegions.Rd
man/getCommonSubrangeSize.Rd
man/getDisjointOverlaps.Rd
man/getDisjointOverlapsWeighted.Rd
man/getGenotype.Rd
man/getHIContactCounts.Rd
man/getMinDist.Rd
man/getRangesOverlaps.Rd
man/getReciprocalOverlaps.Rd
man/getRegionBoundaries.Rd
man/getSegDupOverlaps.Rd
man/getTransChromFusions.Rd
man/gr2grPercOverlap.Rd
man/hotspotter.Rd
man/importCalls.Rd
man/importReadsFromComposite.Rd
man/insertchr.Rd
man/makeBins.Rd
man/permDistanceToFeature.Rd
man/plotAlignmentsPerRegion.Rd
man/plotColumnCounts.Rd
man/plotColumnCountsPerChr.Rd
man/plotCompositeIdeo.Rd
man/plotDistanceTree.Rd
man/plotHICcontactTable.Rd
man/plotHICregional.Rd
man/plotLinks.Rd
man/plotNucmerCoords.Rd
man/plotOverlapWithRanges.Rd
man/plotReadPairCoverage.Rd
man/plotSSEQReadsPerRegion.Rd
man/plotVennPartitions.Rd
man/plotVennPartitionsGen.Rd
man/processReadLinks.Rd
man/randomizeRanges.Rd
man/range2rangeDistance.Rd
man/ranges2UCSC.Rd
man/rangesSizeDistribution.Rd
man/readPairsAsLinks.Rd
man/recalcPercOverlap.Rd
man/reformat.Rd
man/removeRanges.Rd
man/reportOverlapBases.Rd
man/resizeRanges.Rd
man/subtractRegions.Rd
man/synchronizeReadDirRegion.Rd
man/transCoord.Rd
primatR_logo.png
