reportOverlapBases: This function will take in a 'GRanges-class' object of...

In daewoooo/primatR: What the Package Does (TODO)

This function will take in a GRanges-class object of genomic ranges and enumerate the number of overlapping bases with other set of user defined 'query' genomic ranges.

Description

This function will take in a GRanges-class object of genomic ranges and enumerate the number of overlapping bases with other set of user defined 'query' genomic ranges.

Usage

reportOverlapBases(ranges = NULL, query.ranges = NULL, index = NULL)

Arguments

ranges	A GRanges-class object of genomic regions to get the number of overlapping bases with 'query.ranges'.
query.ranges	A GRanges-class object of genomic regions for which one want to report overlaps.
index	A user defined name of a column where the number of overlapping bases between 'ranges' and 'query.ranges' will be reported.

Value

A GRanges-class object.

Author(s)

David Porubsky

daewoooo/primatR documentation built on March 28, 2024, 6:41 a.m.