plotAlignmentsPerRegion: Plot BAM alignments around user defined genomic regions.
In daewoooo/primatR: What the Package Does (TODO)
plotAlignmentsPerRegion R Documentation
Plot BAM alignments around user defined genomic regions.
Description
Plot BAM alignments around user defined genomic regions.
Usage
plotAlignmentsPerRegion(bamfile = NULL, regions = NULL, file = NULL)
Arguments
bamfile
Bamfile with aligned reads.
regions
A GRanges-class object with genomic regions to process.
file
A filename where final plot should be exported.
Value
A ggplot-class object.
Author(s)
David Porubsky
daewoooo/primatR documentation built on Oct. 22, 2024, 9:41 p.m.
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| plotAlignmentsPerRegion | R Documentation |
Plot BAM alignments around user defined genomic regions.
Description
Plot BAM alignments around user defined genomic regions.
Usage
plotAlignmentsPerRegion(bamfile = NULL, regions = NULL, file = NULL)
Arguments
bamfile |
Bamfile with aligned reads. |
regions |
A |
file |
A filename where final plot should be exported. |
Value
A ggplot-class object.
Author(s)
David Porubsky
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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