View source: R/getTransChromFusions.R
getTransChromFusions | R Documentation |
This function reads BAM file into a GRanges
object and searches for reads that
map do different chromosomal locations. Links supported by user defined number of reads are
reported and points to a putative gene fusions.
getTransChromFusions(
bamfile = NULL,
min.mapq = 10,
standardChroms = TRUE,
min.links = 5
)
bamfile |
Bamfile with aligned reads. |
min.mapq |
Minimum mapping quality when importing from BAM files. |
standardChroms |
If set to |
min.links |
Minimum number of supporting Iso-seq reads in order to report a putative gene fusion. |
A GRanges
object reporting all found links.
David Porubsky
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