plotSSEQReadsPerRegion: Plot Strand-seq BAM alignments within a user defined set of...
In daewoooo/primatR: What the Package Does (TODO)
plotSSEQReadsPerRegion R Documentation
Plot Strand-seq BAM alignments within a user defined set of genomic regions.
Description
Plot Strand-seq BAM alignments within a user defined set of genomic regions.
Usage
plotSSEQReadsPerRegion(
bamfiles = NULL,
regions = NULL,
min.mapq = 10,
pairedEndReads = TRUE
)
Arguments
regions
A GRanges-class object with genomic regions to process.
min.mapq
Minimum mapping quality when importing from BAM files.
pairedEndReads
Set to TRUE if you have paired-end reads in your file.
bamfile
Bamfile with aligned reads.
Value
A list of ggplot-class object.
Author(s)
David Porubsky
daewoooo/primatR documentation built on Oct. 22, 2024, 9:41 p.m.
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| plotSSEQReadsPerRegion | R Documentation |
Plot Strand-seq BAM alignments within a user defined set of genomic regions.
Description
Plot Strand-seq BAM alignments within a user defined set of genomic regions.
Usage
plotSSEQReadsPerRegion(
bamfiles = NULL,
regions = NULL,
min.mapq = 10,
pairedEndReads = TRUE
)
Arguments
regions |
A |
min.mapq |
Minimum mapping quality when importing from BAM files. |
pairedEndReads |
Set to |
bamfile |
Bamfile with aligned reads. |
Value
A list of ggplot-class object.
Author(s)
David Porubsky
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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