plotHICcontactTable: Plot horizontal HIC contact matrix.

In daewoooo/primatR: What the Package Does (TODO)

Plot horizontal HIC contact matrix.

Description

This function imports HIC contact values and plots horizontal map of HIC contacts.

Usage

plotHICcontactTable(
  HICcontacts = NULL,
  yHeightRatio = 1/3,
  sd.track = NULL,
  user.track = NULL,
  gene.track = NULL,
  title = NULL
)

Arguments

yHeightRatio	A size ratio between x and y axis. Default: 1/3, what means that the top third of y-axis values will be removed.
HICcontacts.df	A data.frame with the following columns: M1.seqnames, M1.start, M1.end, M2.seqnames, M2.start, M2.end, value, idx1, idx2

Value

A ggplot object.

Author(s)

David Porubsky

daewoooo/primatR documentation built on March 28, 2024, 6:41 a.m.