genomewideRangesIdeo: Plot genome-wide distribution of ranged data. Ranges are...

genomewideRangesIdeoR Documentation

Plot genome-wide distribution of ranged data. Ranges are color by the 'ID' column.

Description

Plot genome-wide distribution of ranged data. Ranges are color by the 'ID' column.

Usage

genomewideRangesIdeo(
  gr,
  userTrack = NULL,
  userTrackGeom = "rect",
  colors = NULL,
  bsgenome = NULL
)

Arguments

gr

A GRanges-class object with metadata columns to be summarized and plotted.

userTrack

A user defined set of ranges defined GRanges-class object to be plotted over the genome-wide ideogram.

userTrackGeom

A ggplot2 geom to be used to visualize 'userTrack'.

colors

A user defined set of colors used for plotting.

bsgenome

A BSgenome-class object to provide chromosome lengths for plotting.

Value

A ggplot object.

Author(s)

David Porubsky


daewoooo/primatR documentation built on Oct. 22, 2024, 9:41 p.m.