genomewideRangesIdeo: Plot genome-wide distribution of ranged data. Ranges are...

In daewoooo/primatR: What the Package Does (TODO)

Plot genome-wide distribution of ranged data. Ranges are color by the 'ID' column.

Description

Plot genome-wide distribution of ranged data. Ranges are color by the 'ID' column.

Usage

genomewideRangesIdeo(
  gr,
  userTrack = NULL,
  userTrackGeom = "rect",
  colors = NULL,
  bsgenome = NULL
)

Arguments

gr	A GRanges-class object with metadata columns to be summarized and plotted.
userTrack	A user defined set of ranges defined GRanges-class object to be plotted over the genome-wide ideogram.
userTrackGeom	A ggplot2 geom to be used to visualize 'userTrack'.
colors	A user defined set of colors used for plotting.
bsgenome	A BSgenome-class object to provide chromosome lengths for plotting.

Value

A ggplot object.

Author(s)

David Porubsky

daewoooo/primatR documentation built on March 28, 2024, 6:41 a.m.