ranges2UCSC: Generates a bedfile from an input GRanges file.

Description Usage Arguments Value Author(s)

View source: R/export.R

Description

Write a bedfile from Genomic Ranges object for upload on to UCSC Genome browser.

Usage

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ranges2UCSC(gr, outputDirectory = ".", index = "bedFile",
  colorRGB = "0,0,0", id.field = "")

Arguments

gr

A GRanges-class object with genomic ranges to be exported into UCSC format.

outputDirectory

A path to directory where to save UCSC bed file.

colorRGB

An RGB color to be used for submitted ranges.

id.field

A name of metacolumn field to use as a name for each range.

Value

NULL

Author(s)

David Porubsky


daewoooo/primatR documentation built on Nov. 8, 2018, 7:44 p.m.