ranges2UCSC: Generates a bedfile from an input GRanges file.

In daewoooo/primatR: What the Package Does (TODO)

Generates a bedfile from an input GRanges file.

Description

Write a bedfile from Genomic Ranges object for upload on to UCSC Genome browser.

Usage

ranges2UCSC(
  gr,
  outputDirectory = ".",
  index = "bedFile",
  colorRGB = "0,0,0",
  id.field = ""
)

Arguments

gr	A GRanges-class object with genomic ranges to be exported into UCSC format.
outputDirectory	A path to directory where to save UCSC bed file.
colorRGB	An RGB color to be used for submitted ranges.
id.field	A name of metacolumn field to use as a name for each range.

Value

NULL

Author(s)

David Porubsky

daewoooo/primatR documentation built on March 28, 2024, 6:41 a.m.