ddiez/scmisc
Miscellaneus Tools for the Analysis of Single Cell Data

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Search the ddiez/scmisc package
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Functions
290
Source code
42
Man pages
54
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ddiez/scmisc: Miscellaneus Tools for the Analysis of Single Cell Data
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API

API for ddiez/scmisc
Miscellaneus Tools for the Analysis of Single Cell Data

Global functions
as.CellDataSet Man page Source code
as.CellDataSet.SingleCellExperiment Man page Source code
calculate_cpdb_cell_graph Source code
calculate_cpdb_cellxcell_matrix Source code
calculate_module_scores Man page Source code
calculate_module_scores.Seurat Man page Source code
cell_density Man page Source code
cluster_cells Man page Source code
cluster_cells.SingleCellExperiment Man page Source code
cluster_genes Man page Source code
cluster_genes.Seurat Man page Source code
compute_density Man page Source code
compute_density.CellDataSet Man page Source code
compute_density.SingleCellExperiment Man page Source code
compute_density.default Man page Source code
compute_jaccard Man page Source code
compute_jaccard.DataFrame Man page Source code
compute_jaccard.SingleCellExperiment Man page Source code
compute_jaccard.data.frame Man page Source code
compute_percentage_variance Man page Source code
compute_percentage_variance.Seurat Man page Source code
compute_purity Man page Source code
compute_purity.DataFrame Man page Source code
compute_purity.SingleCellExperiment Man page Source code
compute_purity.data.frame Man page Source code
create_assay Source code
create_chromatin_assay Source code
create_dimreduc Source code
create_training_sets Man page Source code
create_training_sets.Seurat Man page Source code
create_training_sets.SingleCellExperiment Man page Source code
demux Man page Source code
demux.Seurat Man page Source code
demux_cutoff Man page Source code
expand_column Man page Source code
expand_column.data.frame Man page Source code
expand_column1d Source code
expand_column2d Source code
filter_cells Man page Source code
filter_cells.SingleCellExperiment Man page Source code
filter_cells.matrix Man page Source code
filter_genes Man page Source code
filter_genes.SingleCellExperiment Man page Source code
filter_genes.matrix Man page Source code
fix_coords Source code
fortify.DataFrame Man page Source code
get_assay_summary Man page Source code
get_assay_summary.Seurat Man page Source code
get_assay_summary.SingleCellExperiment Man page Source code
get_coldata Man page Source code
get_coldata.Seurat Man page Source code
get_coldata.SingleCellExperiment Man page Source code
get_coldata.seurat Man page Source code
get_coord Man page Source code
get_coord.CellDataSet Man page Source code
get_coord.Seurat Man page Source code
get_coord.SingleCellExperiment Man page Source code
get_coord.seurat Man page Source code
get_coord_names Man page Source code
get_coord_names.SingleCellExperiment Man page Source code
get_coord_names.seurat Man page Source code
get_data Man page Source code
get_data.Seurat Man page Source code
get_expression Man page Source code
get_matrix Source code
get_obsm Source code
get_rowdata Man page Source code
get_rowdata.Seurat Man page Source code
get_rowdata.SingleCellExperiment Man page Source code
get_rowdata.seurat Man page Source code
plot_coord Man page Source code
plot_coord.Seurat Man page Source code
plot_coord.SingleCellExperiment Man page Source code
plot_coord.data.frame Man page Source code
plot_coord.seurat Man page Source code
plot_coord2 Man page Source code
plot_coord2.Seurat Man page Source code
plot_cpdb_cellxcell Source code
plot_cpdb_cellxpair Source code
plot_cpdb_dotplot Man page Source code
plot_cpdb_heatmap Man page Source code
plot_deg_barplot Man page Source code
plot_enrichment Man page Source code
plot_enrichment_barplot Source code
plot_gene_modules Man page Source code
plot_gene_modules.Seurat Man page Source code
plot_gene_modules_heatmap Man page Source code
plot_gene_modules_heatmap.Seurat Man page Source code
plot_gene_modules_heatmap.matrix Man page Source code
plot_heatmap Man page Source code
plot_heatmap.Seurat Man page Source code
plot_heatmap.SingleCellExperiment Man page Source code
plot_heatmap.matrix Man page Source code
plot_jaccard Man page Source code
plot_jaccard.DataFrame Man page Source code
plot_jaccard.Seurat Man page Source code
plot_jaccard.SingleCellExperiment Man page Source code
plot_jaccard.data.frame Man page Source code
plot_loadings Man page Source code
plot_loadings.Seurat Man page Source code
plot_pairs Man page Source code
plot_pairs.Seurat Man page Source code
plot_pseudotime_gene Man page Source code
plot_pseudotime_gene.cell_data_set Man page Source code
plot_pseudotime_heatmap Man page Source code
plot_pseudotime_heatmap.Seurat Man page Source code
plot_pseudotime_modules Man page Source code
plot_pseudotime_modules.Seurat Man page Source code
plot_purity Man page Source code
plot_purity.DataFrame Man page Source code
plot_purity.Seurat Man page Source code
plot_purity.SingleCellExperiment Man page Source code
plot_purity.data.frame Man page Source code
plot_result_rank Man page Source code
plot_result_rank.data.frame Man page Source code
plot_result_rank.haystack Man page Source code
plot_spatial Man page Source code
plot_spatial.Seurat Man page Source code
plot_trajectory Man page Source code
plot_trajectory.SingleCellExperiment Man page Source code
plot_trajectory.SlingshotDataSet Man page Source code
plot_trajectory_graph Man page Source code
plot_trajectory_graph.SingleCellExperiment Man page Source code
plot_trajectory_graph.SlingshotDataSet Man page Source code
plot_trajectory_graph.layout_ggraph Man page Source code
plot_trajectory_graph.tbl_graph Man page Source code
plot_velocity Man page Source code
plot_violin Man page Source code
plot_violin.Seurat Man page Source code
plot_violin.SingleCellExperiment Man page Source code
plot_violin.data.frame Man page Source code
plot_volcano Man page Source code
process Man page Source code
process.Seurat Man page Source code
pseudobulk Man page Source code
pseudobulk.Seurat Man page Source code
read_cpdb_out Man page Source code
reduce_dim Man page Source code
reduce_dim.SingleCellExperiment Man page Source code
reduce_dim.matrix Man page Source code
run_enrichment Man page Source code
run_enrichment.data.frame Man page Source code
sample_cells Man page Source code
sample_cells.Seurat Man page Source code
sample_cells.SingleCellExperiment Man page Source code
sce Man page
scmisc Man page
scmisc-package Man page
sort_features Man page Source code
sort_features.Seurat Man page Source code
sort_features.SingleCellExperiment Man page Source code
sort_features.matrix Man page Source code
top_deg Man page Source code
ddiez/scmisc documentation built on July 21, 2024, 11:35 a.m.

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