plot_heatmap: plot_heatmap

In ddiez/scmisc: Miscellaneus Tools for the Analysis of Single Cell Data

plot_heatmap

Description

plot_heatmap

Usage

plot_heatmap(x, ...)

## S3 method for class 'Seurat'
plot_heatmap(
  x,
  assay = NULL,
  slot = "data",
  scale = TRUE,
  top_ann = NULL,
  top_ann_col = NULL,
  ...
)

## S3 method for class 'SingleCellExperiment'
plot_heatmap(x, assay = "logcounts", top_ann = NULL, top_ann_col = NULL, ...)

## S3 method for class 'matrix'
plot_heatmap(
  x,
  scale = TRUE,
  show_column_names = FALSE,
  name = "expression",
  ...
)

Arguments

x	object to plot.
...	arguments passed down to ComplexHeatmap::Heatmap.
assay	assay name for Seurat and SingleCellExperiment objects.
slot	slot name for Seurat objects.
scale	whether to scale data data.
top_ann	names of columns to be used as top annotations.
top_ann_col	color definition for the categories in the top annotations.
show_column_names	whether to show column names (default: FALSE).
name	name for the main legend.

ddiez/scmisc documentation built on July 21, 2024, 11:35 a.m.