calculate_module_scores: calculate_module_scores

In ddiez/scmisc: Miscellaneus Tools for the Analysis of Single Cell Data

calculate_module_scores

Description

Calculate gene module score per cell clusters.

Usage

calculate_module_scores(x, ...)

## S3 method for class 'Seurat'
calculate_module_scores(
  x,
  gene_modules,
  group.by = "seurat_clusters",
  assay = NULL,
  slot = "data",
  scale = TRUE,
  ...
)

Arguments

x	object with gene expression levels per cell.
...	arguments passed down to methods.
gene_modules	data.frame with columns gene and module.
group.by	identity to use for grouping cells (default: seurat_clusters).
assay	assay to use for Seurat objects.
slot	slot to use for Seurat objects.
scale	whether to scale the expression data.

ddiez/scmisc documentation built on July 21, 2024, 11:35 a.m.