cluster_genes: cluster_genes

In ddiez/scmisc: Miscellaneus Tools for the Analysis of Single Cell Data

cluster_genes

Description

Cluster genes into modules using louvain/leiden algorithm

Usage

cluster_genes(x, ...)

## S3 method for class 'Seurat'
cluster_genes(
  x,
  features = NULL,
  reduction = "pca",
  assay = NULL,
  slot = "data",
  dims = 1:10,
  approx = TRUE,
  algorithm = "leiden",
  resolution = 0.6,
  return.seurat = FALSE,
  ...
)

Arguments

x	object with genes to clusters.
...	arguments passed down to methods.
features	which features to cluster.
reduction	what reduction embeddings to use.
assay	assay for Seurat objects.
slot	slot for Seurat objects.
dims	dimensions to use.
approx	whether to use approximate method for PCA.
algorithm	algorithm for clustering.
resolution	resolution for clustering.
return.seurat	whether to return a Seurat object.

ddiez/scmisc documentation built on July 21, 2024, 11:35 a.m.