plot_enrichment: plot_enrichment

In ddiez/scmisc: Miscellaneus Tools for the Analysis of Single Cell Data

plot_enrichment

Description

Plot the result of run_enrichment function as a heatmap.

Usage

plot_enrichment(
  x,
  group.by = "cluster",
  direction = c("Up", "Down"),
  FDR = 0.01,
  col_up = c("white", "red"),
  col_down = c("white", "blue"),
  top_ann = NULL,
  circle.scale = 0.2,
  cluster_columns = FALSE,
  border = TRUE,
  padding = NULL,
  ...
)

Arguments

x	data.frame with results from run_enrichment.
group.by	grouping variable (default: cluster).
direction	which direction ("Up", "Down") to plot for enrichment (default: c("Up", "Down")).
FDR	cutoff to select significantly enriched terms/pathways.
col_up	colors to use for Up and passed down to ComplexHeatmap::Heatmap.
col_down	colors to use for Down and passed down to ComplexHeatmap::Heatmap.
top_ann	top annotations passed down to ComplexHeatmap::Heatmap.
circle.scale	scale to be applied to the circles.
cluster_columns	whether to cluster columns.
border	whether to add border.
padding	padding around heatmap passed down to ComplexHeatmap::draw.
...	additional arguments passed down to ComplexHeatmap::Heatmap.

ddiez/scmisc documentation built on July 21, 2024, 11:35 a.m.