get_assay_summary: Compute summary from assay matrix

In ddiez/scmisc: Miscellaneus Tools for the Analysis of Single Cell Data

Compute summary from assay matrix

Description

Compute summary from assay matrix

Usage

get_assay_summary(x, ...)

## S3 method for class 'SingleCellExperiment'
get_assay_summary(
  x,
  name,
  assay.name = "logcounts",
  column = "symbol",
  sum.fun = mean,
  ...
)

## S3 method for class 'Seurat'
get_assay_summary(
  x,
  name,
  assay.name = NULL,
  slot = "data",
  column = "symbol",
  sum.fun = mean,
  ...
)

get_expression(...)

Arguments

x	object to compute summary.
...	arguments passed down to specific methods.
name	name of the feature value for which to compute the summary.
assay.name	name of the assay slot.
column	name of the column where to find 'name' (default: 'symbol').
sum.fun	summary function (by default mean).
slot	name of the Seurat data slot.

ddiez/scmisc documentation built on July 21, 2024, 11:35 a.m.