plot_volcano: plot_volcano

In ddiez/scmisc: Miscellaneus Tools for the Analysis of Single Cell Data

plot_volcano

Description

plot_volcano

Usage

plot_volcano(
  x,
  group.by = "cluster",
  groups = NULL,
  n = 10,
  fdr = 0.01,
  lfc = 1,
  min.segment.length = 0,
  max.overlaps = Inf,
  ...
)

Arguments

x	data.frame with DEG results from FindAllMarkers.
group.by	column to group plots by.
groups	clusters to plot. If null, plot all.
n	number of genes (per down/up-regulated) to highlight.
fdr	false discovery rate cutoff to highlight genes.
lfc	log fold change cutoff to highlight genes.
min.segment.length	minimum segment length for ggrepel.
...	arguments passed down to ggrepel functions.
max.overkaps	max number of overlaps for ggrepel.

ddiez/scmisc documentation built on July 21, 2024, 11:35 a.m.