plot_pairs: plot_pairs

In ddiez/scmisc: Miscellaneus Tools for the Analysis of Single Cell Data

plot_pairs

Description

plot_pairs

Usage

plot_pairs(x, ...)

## S3 method for class 'Seurat'
plot_pairs(
  x,
  features = NULL,
  slot = "data",
  assay = NULL,
  color.by = NULL,
  add.contour = FALSE,
  color.contour = "red",
  cutoff = NULL,
  color.cutoff = "limegreen",
  ...
)

Arguments

x	object to plot.
...	arguments passed down to methods.
features	features to use for paired plots. If null all features in assay.
slot	slot from Seurat object.
assay	assay from Seurat object.
color.by	column from metadata to use for coloring points.
add.contour	whether to add contour plots.
color.contour	color for contour lines.

ddiez/scmisc documentation built on July 21, 2024, 11:35 a.m.