plot_gene_modules_heatmap: plot_gene_modules_heatmap

In ddiez/scmisc: Miscellaneus Tools for the Analysis of Single Cell Data

plot_gene_modules_heatmap

Description

plot_gene_modules_heatmap

Usage

plot_gene_modules_heatmap(x, ...)

## S3 method for class 'matrix'
plot_gene_modules_heatmap(x, ...)

## S3 method for class 'Seurat'
plot_gene_modules_heatmap(
  x,
  gene_modules,
  group.by = "seurat_clusters",
  assay = NULL,
  slot = "data",
  ...
)

Arguments

x	object with gene expression levels per cell.
...	arguments passed down to methods.
gene_modules	data.frame with columns gene and module.
group.by	identity to use for grouping cells (default: seurat_clusters).
assay	assay to use for Seurat objects.
slot	slot to use for Seurat objects.
size	size of the points.

ddiez/scmisc documentation built on July 21, 2024, 11:35 a.m.