Files in ddiez/scmisc

Miscellaneus Tools for the Analysis of Single Cell Data

LICENSE.md R/anndata.R R/assay.R R/cluster.R R/convert.R R/coord.R R/cpdb.R R/data.R R/deg.R R/demux.R R/density.R R/enrichment.R R/filter.R R/fortify.R R/haystack.R R/jaccard.R R/plot.R R/process.R R/pseudobulk.R R/purity.R R/sample.R R/scmisc-data.R R/scmisc-package.R R/sort.R R/spatial.R R/trajectory.R R/variance.R README.Rmd README.md man/as.CellDataSet.Rd man/calculate_module_scores.Rd man/cluster_cells.Rd man/cluster_genes.Rd man/compute_density.Rd man/compute_jaccard.Rd man/compute_percentage_variance.Rd man/compute_purity.Rd man/create_training_sets.Rd man/demux.Rd man/demux_cutoff.Rd man/expand_column.Rd man/filter_cells.Rd man/filter_genes.Rd man/fortify.DataFrame.Rd man/get_assay_summary.Rd man/get_coldata.Rd man/get_coord.Rd man/get_coord_names.Rd man/get_data.Rd man/get_rowdata.Rd man/plot_coord.Rd man/plot_coord2.Rd man/plot_cpdb_dotplot.Rd man/plot_cpdb_heatmap.Rd man/plot_deg_barplot.Rd man/plot_enrichment.Rd man/plot_gene_modules.Rd man/plot_gene_modules_heatmap.Rd man/plot_heatmap.Rd man/plot_jaccard.Rd man/plot_loadings.Rd man/plot_pairs.Rd man/plot_pseudotime_gene.Rd man/plot_pseudotime_heatmap.Rd man/plot_pseudotime_modules.Rd man/plot_purity.Rd man/plot_result_rank.Rd man/plot_spatial.Rd man/plot_trajectory.Rd man/plot_trajectory_graph.Rd man/plot_velocity.Rd man/plot_violin.Rd man/plot_volcano.Rd man/process.Rd man/pseudobulk.Rd man/read_cpdb_out.Rd man/reduce_dim.Rd man/run_enrichment.Rd man/sample_cells.Rd man/sce.Rd man/scmisc-package.Rd man/sort_features.Rd man/top_deg.Rd tests/testthat.R tests/testthat/test-cluster_cells.R tests/testthat/test-compute_density.R tests/testthat/test-compute_jaccard.R tests/testthat/test-compute_purity.R tests/testthat/test-create_training_sets.R tests/testthat/test-filter_cells.R tests/testthat/test-filter_genes.R tests/testthat/test-get_coldata.R tests/testthat/test-get_coord.R tests/testthat/test-get_coord_names.R tests/testthat/test-get_rowdata.R tests/testthat/test-pseudobulk.R tests/testthat/test-reduce_dim.R tests/testthat/test-sample_cells.R tests/testthat/test-sort_features.R vignettes/enrichment.Rmd vignettes/introduction.Rmd