Man pages for ddiez/scmisc
Miscellaneus Tools for the Analysis of Single Cell Data
| as.CellDataSet | as.CellDataSet |
| calculate_module_scores | calculate_module_scores |
| cluster_cells | cluster_cells |
| cluster_genes | cluster_genes |
| compute_density | compute_density |
| compute_jaccard | compute_jaccard |
| compute_percentage_variance | compute_percentage_variance |
| compute_purity | compute_purity |
| create_training_sets | create_training_sets |
| demux | demux |
| demux_cutoff | demux_cutoff |
| expand_column | expand_column |
| filter_cells | filter_cells |
| filter_genes | filter_genes |
| fortify.DataFrame | fortify.DataFrame |
| get_assay_summary | Compute summary from assay matrix |
| get_coldata | get_coldata |
| get_coord | get_coord |
| get_coord_names | get_coord_names |
| get_data | get_data |
| get_rowdata | get_rowdata |
| plot_coord | plot_coord |
| plot_coord2 | plot_coord2 |
| plot_cpdb_dotplot | plot_cpdb_dotplot |
| plot_cpdb_heatmap | plot_cpdb_heatmap |
| plot_deg_barplot | plot_deg_barplot |
| plot_enrichment | plot_enrichment |
| plot_gene_modules | plot_gene_modules |
| plot_gene_modules_heatmap | plot_gene_modules_heatmap |
| plot_heatmap | plot_heatmap |
| plot_jaccard | plot_jaccard |
| plot_loadings | plot_loadings |
| plot_pairs | plot_pairs |
| plot_pseudotime_gene | plot_pseudotime_gene |
| plot_pseudotime_heatmap | plot_pseudotime_heatmap |
| plot_pseudotime_modules | plot_pseudotime_modules |
| plot_purity | plot_purity |
| plot_result_rank | plot_result_rank |
| plot_spatial | plot_spatial |
| plot_trajectory | plot_trajectory |
| plot_trajectory_graph | plot_trajectory_graph |
| plot_velocity | plot_velocity |
| plot_violin | plot_violin |
| plot_volcano | plot_volcano |
| process | process |
| pseudobulk | pseudobulk |
| read_cpdb_out | read_cpdb_out |
| reduce_dim | reduce_dim |
| run_enrichment | run_enrichment |
| sample_cells | sample_cells |
| sce | SingleCellExperiment dataset. |
| scmisc-package | scmisc: Miscellaneus Tools for the Analysis of Single Cell... |
| sort_features | sort_features |
| top_deg | top_deg |
