R/EstQuestions.R
In duncantl/REuPathDB: Interface to REST API of (EuPathDB)
EstBySourceId =
function(
`est_id` = 'AU087658,AA009308,EV500870,AA420947,CV202103', `signature`, `o-fields` = 'NULL', `o-tables` = 'NULL', ..., .url = if(.json) 'http://eupathdb.org/eupathdb/webservices/EstQuestions/EstBySourceId.json' else 'http://eupathdb.org/eupathdb/webservices/EstQuestions/EstBySourceId.xml', .convert = NULL, .json = TRUE
)
{
if(!missing(`o-fields`)) `o-fields` <- checkValues(`o-fields`, c("all", "none", "primary_key", "organism", "length", "dbest_name",
"assembly_source_id", "vector", "stage", "organism_text", "ncbi_tax_id",
"sequence", "wdk_weight"), 'o-fields', TRUE)
if(!missing(`o-tables`)) `o-tables` <- checkValues(`o-tables`, c("all", "none"), 'o-tables', TRUE)
params = list(
'est_id' = `est_id`,
'signature' = `signature`
)
if(!missing(`o-fields`))
params[['o-fields']] = `o-fields`
if(!missing(`o-tables`))
params[['o-tables']] = `o-tables`
ans = getForm(.url, .params = params, ...)
if(is.null(.convert) && .json) return(fromJSON(ans))
if(!is.null(.convert))
.convert(ans)
else if(!is.null(type <- attr(ans, 'Content-Type')) && type == 'text/json')
convertJSON(ans)
else
ans
}
ESTsByGeneIDs =
function(
`single_gene_id` = 'GL50803_10019', `bp_overlap_gte` = '100', `best_alignment_only` = 'Yes', `high_confidence_only` = 'No', `min_percent_identity` = '90', `min_percent_est_aligned` = '20', `o-fields` = 'NULL', `o-tables` = 'NULL', ..., .url = if(.json) 'http://eupathdb.org/eupathdb/webservices/EstQuestions/ESTsByGeneIDs.json' else 'http://eupathdb.org/eupathdb/webservices/EstQuestions/ESTsByGeneIDs.xml', .convert = NULL, .json = TRUE
)
{
`best_alignment_only` <- checkValues(`best_alignment_only`, c("Yes", "No"), 'best_alignment_only', FALSE)
`high_confidence_only` <- checkValues(`high_confidence_only`, c("No", "Yes"), 'high_confidence_only', FALSE)
if(!missing(`o-fields`)) `o-fields` <- checkValues(`o-fields`, c("all", "none", "primary_key", "organism", "length", "dbest_name",
"assembly_source_id", "vector", "stage", "organism_text", "ncbi_tax_id",
"sequence", "wdk_weight", "est_locations", "genes"), 'o-fields', TRUE)
if(!missing(`o-tables`)) `o-tables` <- checkValues(`o-tables`, c("all", "none"), 'o-tables', TRUE)
params = list(
'single_gene_id' = `single_gene_id`,
'bp_overlap_gte' = `bp_overlap_gte`,
'best_alignment_only' = `best_alignment_only`,
'high_confidence_only' = `high_confidence_only`,
'min_percent_identity' = `min_percent_identity`,
'min_percent_est_aligned' = `min_percent_est_aligned`
)
if(!missing(`o-fields`))
params[['o-fields']] = `o-fields`
if(!missing(`o-tables`))
params[['o-tables']] = `o-tables`
ans = getForm(.url, .params = params, ...)
if(is.null(.convert) && .json) return(fromJSON(ans))
if(!is.null(.convert))
.convert(ans)
else if(!is.null(type <- attr(ans, 'Content-Type')) && type == 'text/json')
convertJSON(ans)
else
ans
}
EstsBySimilarity =
function(
`BlastDatabaseType` = 'Transcripts', `BlastAlgorithm` = 'blastn', `BlastDatabaseOrganism` = 'Entamoeba histolytica HM-1:IMSS', `BlastQuerySequence`, `-e` = '10', `-v` = '50', `-b` = '50', `-filter` = 'yes', `o-fields` = 'NULL', `o-tables` = 'NULL', ..., .url = if(.json) 'http://eupathdb.org/eupathdb/webservices/EstQuestions/EstsBySimilarity.json' else 'http://eupathdb.org/eupathdb/webservices/EstQuestions/EstsBySimilarity.xml', .convert = NULL, .json = TRUE
)
{
`BlastDatabaseType` <- checkValues(`BlastDatabaseType`, c("Transcripts", "Proteins", "Genome", "ORF", "EST", "Assemblies",
"Isolates", "Genome Survey Sequences"), 'BlastDatabaseType', FALSE)
`BlastAlgorithm` <- checkValues(`BlastAlgorithm`, c("blastn", "blastp", "blastx", "tblastn", "tblastx"), 'BlastAlgorithm', FALSE)
`BlastDatabaseOrganism` <- checkValues(`BlastDatabaseOrganism`, c("Entamoeba histolytica HM-1:IMSS", "Entamoeba dispar SAW760",
"Encephalitozoon cuniculi GB-M1", "Trypanosoma cruzi", "Trypanosoma brucei",
"Leishmania major", "Leishmania infantum", "Leishmania braziliensis",
"Trypanosoma congolense", "Other Apicomplexan ESTs", "Plasmodium berghei",
"Plasmodium falciparum", "Plasmodium vivax", "Plasmodium yoelii",
"Toxoplasma gondii", "Neospora caninum", "Cryptosporidium parvum",
"Cryptosporidium muris", "Giardia", "Trichomonas vaginalis"), 'BlastDatabaseOrganism', TRUE)
`-filter` <- checkValues(`-filter`, c("yes", "no"), '-filter', FALSE)
if(!missing(`o-fields`)) `o-fields` <- checkValues(`o-fields`, c("all", "none", "primary_key", "organism", "length", "dbest_name",
"assembly_source_id", "vector", "stage", "organism_text", "ncbi_tax_id",
"sequence", "wdk_weight"), 'o-fields', TRUE)
if(!missing(`o-tables`)) `o-tables` <- checkValues(`o-tables`, c("all", "none"), 'o-tables', TRUE)
params = list(
'BlastDatabaseType' = `BlastDatabaseType`,
'BlastAlgorithm' = `BlastAlgorithm`,
'BlastDatabaseOrganism' = `BlastDatabaseOrganism`,
'BlastQuerySequence' = `BlastQuerySequence`,
'-e' = `-e`,
'-v' = `-v`,
'-b' = `-b`,
'-filter' = `-filter`
)
if(!missing(`o-fields`))
params[['o-fields']] = `o-fields`
if(!missing(`o-tables`))
params[['o-tables']] = `o-tables`
ans = getForm(.url, .params = params, ...)
if(is.null(.convert) && .json) return(fromJSON(ans))
if(!is.null(.convert))
.convert(ans)
else if(!is.null(type <- attr(ans, 'Content-Type')) && type == 'text/json')
convertJSON(ans)
else
ans
}
EstsByLocation =
function(
`organism` = 'Plasmodium falciparum', `chromosomeOptional` = 'Choose chromosome', `sequenceId` = 'NULL', `start_point` = '1', `end_point` = '0', `libraryId` = 'Ugandan isolate UAM12 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM13 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM14 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM15 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM16 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM17 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM18 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM20 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM21 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM22 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM23 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM25 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM26 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM27 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM28 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM29 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM31 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM32 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM33 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM34 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM35 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM36 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM37 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM38 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM39 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM40 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM41 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM42 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM43 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM44 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM45 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM46 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM47 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM48 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM49 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM50 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM51 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM52 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM53 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS03 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS06 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS07 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS08 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS10 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS11 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS12 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS13 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS14 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS16 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS17 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS18 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS19 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS20 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS21 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS22 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS23 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS24 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS25 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS26 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS27 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS28 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS29 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS31 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS32 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS33 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS34 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS36 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS37 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS38 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS39 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS40 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS41 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS43 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS44 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS45 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS46 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS47 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS48 Pf var gene cDNA (Trophozoite),Ugandan isolate UKM19 Pf Ring stage var gene cDNA,Ugandan isolate UKM19 Pf Trophozoite stage var gene cDNA,Ugandan isolate UKM64 Pf Ring stage var gene cDNA,Ugandan isolate UKM64 Pf Trophozoite stage var gene cDNA,Ugandan isolate UKS1 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS10 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS12 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS13 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS14 Pf Ring stage var gene cDNA,Ugandan isolate UKS14 Pf Trophozoite stage var gene cDNA,Ugandan isolate UKS14 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS15 Pf Ring stage var gene cDNA,Ugandan isolate UKS15 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS17 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS2 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS25 Pf Ring stage var gene cDNA,Ugandan isolate UKS25 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS3 Pf Ring stage var gene cDNA,Ugandan isolate UKS3 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS4 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS47 Pf Ring stage var gene cDNA,Ugandan isolate UKS47 Pf Trophozoite stage var gene cDNA,Ugandan isolate UKS5 Pf Ring stage var gene cDNA,Ugandan isolate UKS5 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS7 Pf Ring stage var gene cDNA,Ugandan isolate UKS7 Pf Trophozoite stage var gene cDNA,Ugandan isolate UKS7 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS9 Pf var gene cDNA (Trophozoite),VARPB11A ( ),VARPB11B ( ),VARPB13A ( ),VARPB13C ( ),VARPB13D ( ),VARPB13G ( ),VARPB13H ( ),VARPB14A ( ),VARPB14B ( ),VARPB14C ( ),VARPB14D ( ),VARPB15A ( ),VARPB15C ( ),VARPB15E ( ),VARPB16A ( ),VARPB16G ( ),VARPB17A ( ),VARPB17D ( ),VARPB17G ( ),VARPB18A ( ),VARPB18C ( ),VARPB18F ( ),VARPB18H ( ),VARPB19B ( ),VARPB19D ( ),VARPB19H ( ),VARPB1C ( ),VARPB1D ( ),VARPB1E ( ),VARPB1F ( ),VARPB1G ( ),VARPB1H ( ),VARPB20B ( ),VARPB20D ( ),VARPB20F ( ),VARPB20G ( ),VARPB21A ( ),VARPB21B ( ),VARPB21E ( ),VARPB21G ( ),VARPB21H ( ),VARPB22A ( ),VARPB22B ( ),VARPB22C ( ),VARPB22D ( ),VARPB22E ( ),VARPB22F ( ),VARPB22G ( ),VARPB22H ( ),VARPB23B ( ),VARPB23D ( ),VARPB23E ( ),VARPB23F ( ),VARPB23G ( ),VARPB23H ( ),VARPB24A ( ),VARPB24B ( ),VARPB24C ( ),VARPB24D ( ),VARPB24E ( ),VARPB24G ( ),VARPB24H ( ),VARPB25A ( ),VARPB25B ( ),VARPB25C ( ),VARPB25E ( ),VARPB25F ( ),VARPB25G ( ),VARPB26B ( ),VARPB26D ( ),VARPB26E ( ),VARPB26F ( ),VARPB26G ( ),VARPB26H ( ),VARPB27A ( ),VARPB27B ( ),VARPB27C ( ),VARPB27D ( ),VARPB27E ( ),VARPB27F ( ),VARPB27G ( ),VARPB27H ( ),VARPB28A ( ),VARPB28B ( ),VARPB28C ( ),VARPB28E ( ),VARPB28F ( ),VARPB28G ( ),VARPB29A ( ),VARPB29B ( ),VARPB29C ( ),VARPB29E ( ),VARPB29F ( ),VARPB29G ( ),VARPB29H ( ),VARPB2A ( ),VARPB2D ( ),VARPB2E ( ),VARPB2F ( ),VARPB30A ( ),VARPB31A ( ),VARPB31B ( ),VARPB31D ( ),VARPB31F ( ),VARPB31G ( ),VARPB31H ( ),VARPB32C ( ),VARPB32F ( ),VARPB8B ( ),VARPB8C ( ),VARPB8D ( ),VARPB8F ( ),VARPB8G ( ),VARPB8H ( ),VARPB9A ( ),VARPB9B ( ),VARPB9C ( ),VARPB9H ( ),WatanabePf3D7_cultured,WatanabePv,WatanabePy17XL,XPB Sugano cDNA library (erythrocytic stage),XPF Sugano cDNA library (erythrocytic stage),XPV Sugano cDNA library (erythrocytic stage),XPYs Sugano cDNA library (erythrocytic stage),XPYw Sugano cDNA library (erythrocytic stage),Zhang/Gardner Pf 3D7 mixed asexual (Asexual stage),cbsPfHB3.1; Debopam Chakrabarti,czapPFDd2.1; Debopam Chakrabarti,ookinete library (12 h; 18h and 24 h after in vitro culture),Nc 1314 Tachyzoite cDNA,Nc-1 Tachyzoite cDNA Library,Nc-1 Tachyzoite cDNA Library 2,Nc-1 pZ Tachyzoite cDNA Library,Nc-1Tachyzoite cDNA,Nc-LIV Tachyzoite cDNA Library,Neospora caninum,Neospora caninum Lambda Zap cDNA library,RH tachyzoite cDNA library,Tg CAST Tachyzoite cDNA Library,Tg CAST Tachyzoite cDNA Library 2,Tg COUG Tachyzoite cDNA Library,TgMAS Tachyzoite cDNA Library,TgME49 3 day invitro bradyzoite,TgME49 B7 Tachyzoite cDNA Library 1,TgME49 B7 Tachyzoite cDNA Library 2,TgME49 Tachyzoite cDNA,TgME49 invivo Bradyzoite cDNA (in vitro Bradyzoite; 6day),TgME49 invivo Bradyzoite cDNA size selected,TgME49cDNA (in vitro Bradyzoite; 6day),TgRH Tachyzoite FL cDNA,TgRH Tachyzoite Norm 1 cDNA Library,TgRH Tachyzoite Norm 5 cDNA Library,TgRH Tachyzoite Norm 7 cDNA Library,TgRH Tachyzoite Subtracted cDNA Library,TgRH Tachyzoite cDNA,TgRH*-Tachyzoite cDNA,TgRHcDNA,TgVEG Fully sporulated oocyst cDNA (Fully sporulated oocysts),TgVEG Partially sporulated oocyst cDNA (Partially sporulated oocysts),TgVEG-Tachyzoite cDNA,TgVEG118 Tachyzoite cDNA Library,TgVEG118 Tachyzoite cDNA Library-2,TgZAP-cDNA1 (tachyzoite),Toxoplasma gondii,Toxoplasma gondii Bradyzoite Library (Bradyzoite developmental stage),Toxoplasma gondii Tachyzoite Library (Tachyzoite developmental stage),Toxoplasma gondii encystation; subtracted cDNA,Toxoplasma gondii mRNA (T.Koyama),WatanabeTgRH (tachyzoites),differentially expressed gene in tachyzoite stage of Neospora caninum Korea isolate Nc-Kr2 (Tachy...,Cold-induced pseudocyst (TvCS) (Pseudocyst stage),Cot1000 normalized T1 cDNA library,Cot6 normalized T1 cDNA library,Fibronectin-mediated cytoadherence (TvFN) (Amoeboid stage),G2/M trophozoite (TvG2M) (G1/S phase),HMW C1 cDNA library,Low glucose culture (TvLG),Low iron culture (TvLI),Normal unsynchronized culture (TvEST) (Unsynchronized culture),Trichomonas vaginalis,VEC-mediated cytoadherence (TvVEC) (Amoeboid stage),non-normalized T1 cDNA library,Bloodstream form of serodeme ILTat1.1,Differentially expressed Trypanosoma brucei mRNAs,Leishmania braziliensis,Leishmania braziliensis amastigote stage; 72 hours post infection,Leishmania braziliensis procyclic stage; logarithmic growth phase,Leishmania infantum,Leishmania major,Leishmania major Amastigote Lambda Zap II library,Leishmania major Amastigote full length cDNA library,Leishmania major promastigote full length cDNA library from early logarithmic stage (day 3),Leishmania major promastigote full length cDNA library from logarithmic stage (day 7),Leishmania major promastigote full length cDNA library from stationary stage (day 10),Leishmania mexicana,LmLV39cDNA,MVAT4 bloodstream form of serodeme WRATat1.1,Random insertions of transposon MosHYG in Leishmania major (promastigote),SM-Lib-Tc Tehuantepec 17LER,SM-Lib-Tc Tehuantepec 17WTS,SM-Lib-Tc Y BZR,Stage-specific mRNA,T. Cruzi epimastigote normalised cDNA Library,T. cruzi epimastigote normalised cDNA Library,T. cruzi epimastigote normalized cDNA Library,T.cruzi epimastigote non-normalized cDNA Library,T.cruzi epimastigote normalized cDNA Library,TcAM (amastigote-like),TcT-E (trypomastigote),TcTR (trypomastigote),Trypanosoma brucei,Trypanosoma brucei rhodesiense ZAP II library (Insect form),Trypanosoma brucei strain 927 ESTs,Trypanosoma congolense,Trypanosoma congolense isolate IL300 bloodstream stage,Trypanosoma congolense isolate IL300 epimastigote stage,VARPB34A ( ),VARPB34E ( ),VARPB34F ( ),VARPB34H ( ),VARPB35D ( ),VARPB35F ( ),VARPB35G ( ),VARPB35H ( ),VARPB36C ( ),VARPB36D ( ),VARPB36H ( ),VARPB39B ( ),VARPB39C ( ),VARPB39D ( ),VARPB39E ( ),VARPB39G ( ),VARPB39H ( ),VARPB3A ( ),VARPB3B ( ),VARPB3C ( ),VARPB3D ( ),VARPB3E ( ),VARPB3F ( ),VARPB3G ( ),VARPB3H ( ),VARPB40A ( ),VARPB40D ( ),VARPB40E ( ),VARPB40F ( ),VARPB40G ( ),VARPB40H ( ),VARPB41F ( ),VARPB42B ( ),VARPB42C ( ),VARPB42D ( ),VARPB42F ( ),VARPB42G ( ),VARPB42H ( ),VARPB43B ( ),VARPB43C ( ),VARPB43D ( ),VARPB43E ( ),VARPB43F ( ),VARPB43G ( ),VARPB43H ( ),VARPB47E ( ),VARPB47F ( ),VARPB47G ( ),VARPB48A ( ),VARPB48B ( ),VARPB48C ( ),VARPB48D ( ),VARPB48E ( ),VARPB48G ( ),VARPB48H ( ),VARPB49F ( ),VARPB49H ( ),VARPB4A ( ),VARPB4B ( ),VARPB4C ( ),VARPB4D ( ),VARPB4E ( ),VARPB4F ( ),VARPB4G ( ),VARPB4H ( ),VARPB50E ( ),VARPB50F ( ),VARPB50G ( ),VARPB50H ( ),VARPB51A ( ),VARPB51B ( ),VARPB51F ( ),VARPB51G ( ),VARPB51H ( ),VARPB53A ( ),VARPB53B ( ),VARPB53C ( ),VARPB53D ( ),VARPB53E ( ),VARPB53F ( ),VARPB53G ( ),VARPB53H ( ),VARPB54A ( ),VARPB54B ( ),VARPB54C ( ),VARPB54D ( ),VARPB54E ( ),VARPB54F ( ),VARPB54G ( ),VARPB54H ( ),VARPB55A ( ),VARPB55B ( ),VARPB55C ( ),VARPB55D ( ),VARPB55F ( ),VARPB55G ( ),VARPB55H ( ),VARPB56A ( ),VARPB56B ( ),VARPB56C ( ),VARPB56D ( ),VARPB56E ( ),VARPB56F ( ),VARPB56G ( ),VARPB56H ( ),VARPB57A ( ),VARPB57B ( ),VARPB57C ( ),VARPB58A ( ),VARPB58B ( ),VARPB58C ( ),VARPB58D ( ),VARPB58E ( ),VARPB58F ( ),VARPB58G ( ),VARPB58H ( ),VARPB59A ( ),VARPB59B ( ),VARPB59C ( ),VARPB59D ( ),VARPB59E ( ),VARPB59F ( ),VARPB59G ( ),VARPB59H ( ),VARPB5A ( ),VARPB5B ( ),VARPB5C ( ),VARPB5D ( ),VARPB5E ( ),VARPB5F ( ),VARPB5G ( ),VARPB5H ( ),VARPB60A ( ),VARPB60B ( ),VARPB60C ( ),VARPB6A ( ),VARPB6B ( ),VARPB6C ( ),VARPB6D ( ),VARPB6E ( ),VARPB6F ( ),VARPB6G ( ),VARPB6H ( ),VARPB7A ( ),VARPB7B ( ),VARPB7C ( ),VARPB7D ( ),VARPB7E ( ),VARPB7F ( ),VARPB7G ( ),VARPB7H ( ),VARPB8A ( ),E. histolytica Normalized cDNA library,Entamoeba cDNA clone 6 (trophozoite),Entamoeba cDNA to mRNA (trophozoite),Entamoeba dispar,Entamoeba dispar cDNAs (trophozoite),Entamoeba histolytica,Entamoeba histolytica HM-1:IMSS,Entamoeba histolytica HM-1:IMSS mRNA (Tomoo Tanaka) (trophozoite),Entamoeba histolytica YS-27,Entamoeba histolytica trophozoite,C. parvum KSU-1 normalized sporozoite,Cryptosporidium muris,Cryptosporidium muris (strain RN66) cDNA library; stage oocyst,Cryptosporidium parvum,Pooled Cryptosporidium parvum KSU-1 enriched 24-48hr post-infection; in-vitro non-normalized nano...,WatanabeCpHNJ-1 (oocyst),XCP Sugano cDNA library (sporozoite stage),pSKIIminusCpIOWAsporoLib2 (sporozoite),uniZAPCpIOWAsporoLib1 (sporozoite),uniZAPCpIOWAsporoLib3 (sporozoite),Giardia Assemblage,Giardia lamblia trophozoite (Trophozoite),trophozoite cDNA,Encephalitozoon cuniculi,RACE-PCR products from Encephalitozoon cuniculi (Dormant spores),Blood stage Plasmodium falciparum cDNA library PFExtensions,Blood stage Plasmodium falciparum cDNA library PfBamH1,Blood stage Plasmodium falciparum cDNA library PfSau3a,Blood stage Plasmodium falciparum cDNA library PfSuOrig,Field isolate cDNA library,GenoScope Schizont enriched,In vitro adapted parasite UAM52b Pf Ring stage var gene cDNA,In vitro adapted parasite UAM52b Pf Trophozoite stage var gene cDNA,In vitro adapted parasite UAS22b Pf Ring stage var gene cDNA,In vitro adapted parasite UAS22b Pf Trophozoite stage var gene cDNA,In vitro adapted parasite UAS29b Pf Ring stage var gene cDNA,In vitro adapted parasite UAS29b Pf Trophozoite stage var gene cDNA,In vitro adapted parasite UAS31b Pf Ring stage var gene cDNA,In vitro adapted parasite UAS31b Pf Trophozoite stage var gene cDNA,In vitro adapted parasite UAS41b Pf Ring stage var gene cDNA,In vitro adapted parasite UAS41b Pf Trophozoite stage var gene cDNA,Laboratory isolate 3D7AH1 Pf Ring stage var gene cDNA,Laboratory isolate 3D7AH1 Pf Trophozoite stage var gene cDNA,Laboratory isolate 3D7AH1S.2 Pf Ring stage var gene cDNA,Laboratory isolate 3D7AH1S.2 Pf Trophozoite stage var gene cDNA,Laboratory isolate 7G8 Pf Ring stage var gene cDNA,Laboratory isolate 7G8 Pf Trophozoite stage var gene cDNA,Laboratory isolate DD2 Pf Ring stage var gene cDNA,Laboratory isolate DD2 Pf Trophozoite stage var gene cDNA,Laboratory isolate FCR3 Pf Ring stage var gene cDNA,Laboratory isolate FCR3 Pf Trophozoite stage var gene cDNA,Laboratory isolate FCR3s1.6 Pf Ring stage var gene cDNA,Laboratory isolate FCR3s1.6 Pf Trophozoite stage var gene cDNA,Laboratory isolate TM284 Pf Ring stage var gene cDNA,Laboratory isolate TM284 Pf Trophozoite stage var gene cDNA,Pb cDNA #17; Tommaso Pace; Marta Ponzi; and Clara Frontali (asynchronous blood stage),Pb cDNA #20; Charles Yowell and Jane Carlton (asynchronous blood stage),Pb sgSpz/ooSpz subtraction library,Plasmodium berghei,Plasmodium berghei NK65 salivary gland sporozoite,Plasmodium berghei cDNA library,Plasmodium berghei erythrocytic schizont,Plasmodium berghei liver stage parasite,Plasmodium berghei midgut sporozoite,Plasmodium berghei ookinete,Plasmodium berghei ookinete stage,Plasmodium berghei salivary grand sporozoite (salivary gland sporozoite),Plasmodium berghei strain ANKA erythrocytic stage,Plasmodium falciparum,Plasmodium falciparum 3D7 asexual cDNA,Plasmodium falciparum 3D7 gametocyte cDNA library (gametocyte (stage III-V)),Plasmodium falciparum FCB1 schizont,Plasmodium falciparum FcB1 schizont,Plasmodium falciparum NF54 (D.A.Fidock) (asynchronous asexual blood stage),Plasmodium falciparum cDNA pUC8 Express Library (late erythrocytic-stage parasite mRNA),Plasmodium vivax,Plasmodium yoelii,Plasmodium yoelii liver stage LCM cDNA library (40 hour liver schizont),Plasmodium yoelii sporozoite cDNA (sporozoites from salivary gland),Plasmodium yoelii yoelii from Anopheles stephensi midgut (oocyst),Plasmodium yoelli 17X axenic hepatic stages,PvBEcDNA (Assexual Blood Stages),PyBS (Asexual blood stages),SSH library of Plasmodium berghei strain K173 (erythrocytic stage),SSH library of Plasmodium berghei strain RQ (erythrocytic stage),Sugano Malaria cDNA library (erythrocytic stage),Ugandan isolate UAM05 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM08 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM09 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM11 Pf var gene cDNA (Trophozoite),Trypanosoma congolense isolate IL300 metacyclic stage,Trypanosoma congolense isolate IL300 normalised bloodstream stage,Trypanosoma congolense isolate IL300 normalised metacyclic stage,Trypanosoma congolense isolate IL300 procyclic stage,Trypanosoma cruzi,Trypanosoma cruzi CL Brener epimastigote,Trypanosoma cruzi Y (Tomoo Tanaka),Trypanosoma cruzi amastigote cDNA library,Trypanosoma cruzi differential display cDNA library,page (promastigote),sucrose-gradient-F23 (promastigote),sucrose-gradient-F25 (promastigote)', `best_alignment_only` = 'Yes', `high_confidence_only` = 'No', `min_percent_identity` = '90', `min_percent_est_aligned` = '20', `o-fields` = 'NULL', `o-tables` = 'NULL', ..., .url = if(.json) 'http://eupathdb.org/eupathdb/webservices/EstQuestions/EstsByLocation.json' else 'http://eupathdb.org/eupathdb/webservices/EstQuestions/EstsByLocation.xml', .convert = NULL, .json = TRUE
)
{
`organism` <- checkValues(`organism`, c("Cryptosporidium parvum", "Encephalitozoon cuniculi", "Plasmodium berghei",
"Plasmodium falciparum", "Plasmodium vivax", "Neospora caninum",
"Toxoplasma gondii GT1", "Toxoplasma gondii ME49", "Toxoplasma gondii VEG",
"Leishmania braziliensis", "Leishmania infantum", "Leishmania major",
"Leishmania mexicana", "Trypanosoma brucei Lister str...", "Trypanosoma brucei TREU927",
"Trypanosoma brucei gambiense", "Trypanosoma congolense", "Trypanosoma cruzi CL Brener E...",
"Trypanosoma cruzi CL Brener N..."), 'organism', FALSE)
`chromosomeOptional` <- checkValues(`chromosomeOptional`, c("36", "35", "34", "33", "32", "31", "30", "29", "28", "27",
"26", "25", "24", "5", "4", "3", "2", "1", "XI", "X", "IX", "VIII",
"VII", "VI", "V", "Choose chromosome", "chromosome 1", "chromosome 2",
"chromosome 3", "chromosome 4", "chromosome 5", "chromosome 6",
"chromosome 7", "chromosome 8", "I", "II", "III", "IV", "6",
"7", "8", "9", "10", "11", "12", "13", "14", "un", "Ia", "Ib",
"VIIa", "VIIb", "XII", "15", "16", "17", "18", "19", "20", "21",
"22", "23"), 'chromosomeOptional', FALSE)
`libraryId` <- checkValues(`libraryId`, "`EstsByLocation.libraryId.options`", 'libraryId', TRUE)
`best_alignment_only` <- checkValues(`best_alignment_only`, c("Yes", "No"), 'best_alignment_only', FALSE)
`high_confidence_only` <- checkValues(`high_confidence_only`, c("No", "Yes"), 'high_confidence_only', FALSE)
if(!missing(`o-fields`)) `o-fields` <- checkValues(`o-fields`, c("all", "none", "primary_key", "organism", "length", "dbest_name",
"assembly_source_id", "vector", "stage", "organism_text", "ncbi_tax_id",
"sequence", "wdk_weight", "est_location"), 'o-fields', TRUE)
if(!missing(`o-tables`)) `o-tables` <- checkValues(`o-tables`, c("all", "none"), 'o-tables', TRUE)
params = list(
'organism' = `organism`,
'chromosomeOptional' = `chromosomeOptional`,
'start_point' = `start_point`,
'end_point' = `end_point`,
'libraryId' = `libraryId`,
'best_alignment_only' = `best_alignment_only`,
'high_confidence_only' = `high_confidence_only`,
'min_percent_identity' = `min_percent_identity`,
'min_percent_est_aligned' = `min_percent_est_aligned`
)
if(!missing(`sequenceId`))
params[['sequenceId']] = `sequenceId`
if(!missing(`o-fields`))
params[['o-fields']] = `o-fields`
if(!missing(`o-tables`))
params[['o-tables']] = `o-tables`
ans = getForm(.url, .params = params, ...)
if(is.null(.convert) && .json) return(fromJSON(ans))
if(!is.null(.convert))
.convert(ans)
else if(!is.null(type <- attr(ans, 'Content-Type')) && type == 'text/json')
convertJSON(ans)
else
ans
}
`EstsByLocation.libraryId.options` =
c("Ugandan isolate UAM12 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM13 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM14 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM15 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM16 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM17 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM18 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM20 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM21 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM22 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM23 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM25 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM26 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM27 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM28 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM29 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM31 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM32 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM33 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM34 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM35 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM36 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM37 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM38 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM39 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM40 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM41 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM42 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM43 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM44 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM45 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM46 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM47 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM48 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM49 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM50 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM51 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM52 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM53 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS03 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS06 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS07 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS08 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS10 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS11 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS12 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS13 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS14 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS16 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS17 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS18 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS19 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS20 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS21 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS22 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS23 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS24 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS25 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS26 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS27 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS28 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS29 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS31 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS32 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS33 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS34 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS36 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS37 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS38 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS39 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS40 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS41 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS43 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS44 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS45 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS46 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS47 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS48 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKM19 Pf Ring stage var gene cDNA", "Ugandan isolate UKM19 Pf Trophozoite stage var gene cDNA",
"Ugandan isolate UKM64 Pf Ring stage var gene cDNA", "Ugandan isolate UKM64 Pf Trophozoite stage var gene cDNA",
"Ugandan isolate UKS1 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKS10 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS12 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKS13 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS14 Pf Ring stage var gene cDNA", "Ugandan isolate UKS14 Pf Trophozoite stage var gene cDNA",
"Ugandan isolate UKS14 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKS15 Pf Ring stage var gene cDNA",
"Ugandan isolate UKS15 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKS17 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS2 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKS25 Pf Ring stage var gene cDNA",
"Ugandan isolate UKS25 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKS3 Pf Ring stage var gene cDNA",
"Ugandan isolate UKS3 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKS4 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS47 Pf Ring stage var gene cDNA", "Ugandan isolate UKS47 Pf Trophozoite stage var gene cDNA",
"Ugandan isolate UKS5 Pf Ring stage var gene cDNA", "Ugandan isolate UKS5 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS7 Pf Ring stage var gene cDNA", "Ugandan isolate UKS7 Pf Trophozoite stage var gene cDNA",
"Ugandan isolate UKS7 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKS9 Pf var gene cDNA (Trophozoite)",
"VARPB11A ( )", "VARPB11B ( )", "VARPB13A ( )", "VARPB13C ( )",
"VARPB13D ( )", "VARPB13G ( )", "VARPB13H ( )", "VARPB14A ( )",
"VARPB14B ( )", "VARPB14C ( )", "VARPB14D ( )", "VARPB15A ( )",
"VARPB15C ( )", "VARPB15E ( )", "VARPB16A ( )", "VARPB16G ( )",
"VARPB17A ( )", "VARPB17D ( )", "VARPB17G ( )", "VARPB18A ( )",
"VARPB18C ( )", "VARPB18F ( )", "VARPB18H ( )", "VARPB19B ( )",
"VARPB19D ( )", "VARPB19H ( )", "VARPB1C ( )", "VARPB1D ( )",
"VARPB1E ( )", "VARPB1F ( )", "VARPB1G ( )", "VARPB1H ( )", "VARPB20B ( )",
"VARPB20D ( )", "VARPB20F ( )", "VARPB20G ( )", "VARPB21A ( )",
"VARPB21B ( )", "VARPB21E ( )", "VARPB21G ( )", "VARPB21H ( )",
"VARPB22A ( )", "VARPB22B ( )", "VARPB22C ( )", "VARPB22D ( )",
"VARPB22E ( )", "VARPB22F ( )", "VARPB22G ( )", "VARPB22H ( )",
"VARPB23B ( )", "VARPB23D ( )", "VARPB23E ( )", "VARPB23F ( )",
"VARPB23G ( )", "VARPB23H ( )", "VARPB24A ( )", "VARPB24B ( )",
"VARPB24C ( )", "VARPB24D ( )", "VARPB24E ( )", "VARPB24G ( )",
"VARPB24H ( )", "VARPB25A ( )", "VARPB25B ( )", "VARPB25C ( )",
"VARPB25E ( )", "VARPB25F ( )", "VARPB25G ( )", "VARPB26B ( )",
"VARPB26D ( )", "VARPB26E ( )", "VARPB26F ( )", "VARPB26G ( )",
"VARPB26H ( )", "VARPB27A ( )", "VARPB27B ( )", "VARPB27C ( )",
"VARPB27D ( )", "VARPB27E ( )", "VARPB27F ( )", "VARPB27G ( )",
"VARPB27H ( )", "VARPB28A ( )", "VARPB28B ( )", "VARPB28C ( )",
"VARPB28E ( )", "VARPB28F ( )", "VARPB28G ( )", "VARPB29A ( )",
"VARPB29B ( )", "VARPB29C ( )", "VARPB29E ( )", "VARPB29F ( )",
"VARPB29G ( )", "VARPB29H ( )", "VARPB2A ( )", "VARPB2D ( )",
"VARPB2E ( )", "VARPB2F ( )", "VARPB30A ( )", "VARPB31A ( )",
"VARPB31B ( )", "VARPB31D ( )", "VARPB31F ( )", "VARPB31G ( )",
"VARPB31H ( )", "VARPB32C ( )", "VARPB32F ( )", "VARPB8B ( )",
"VARPB8C ( )", "VARPB8D ( )", "VARPB8F ( )", "VARPB8G ( )", "VARPB8H ( )",
"VARPB9A ( )", "VARPB9B ( )", "VARPB9C ( )", "VARPB9H ( )", "WatanabePf3D7_cultured",
"WatanabePv", "WatanabePy17XL", "XPB Sugano cDNA library (erythrocytic stage)",
"XPF Sugano cDNA library (erythrocytic stage)", "XPV Sugano cDNA library (erythrocytic stage)",
"XPYs Sugano cDNA library (erythrocytic stage)", "XPYw Sugano cDNA library (erythrocytic stage)",
"Zhang/Gardner Pf 3D7 mixed asexual (Asexual stage)", "cbsPfHB3.1; Debopam Chakrabarti",
"czapPFDd2.1; Debopam Chakrabarti", "ookinete library (12 h; 18h and 24 h after in vitro culture)",
"Nc 1314 Tachyzoite cDNA", "Nc-1 Tachyzoite cDNA Library", "Nc-1 Tachyzoite cDNA Library 2",
"Nc-1 pZ Tachyzoite cDNA Library", "Nc-1Tachyzoite cDNA", "Nc-LIV Tachyzoite cDNA Library",
"Neospora caninum", "Neospora caninum Lambda Zap cDNA library",
"RH tachyzoite cDNA library", "Tg CAST Tachyzoite cDNA Library",
"Tg CAST Tachyzoite cDNA Library 2", "Tg COUG Tachyzoite cDNA Library",
"TgMAS Tachyzoite cDNA Library", "TgME49 3 day invitro bradyzoite",
"TgME49 B7 Tachyzoite cDNA Library 1", "TgME49 B7 Tachyzoite cDNA Library 2",
"TgME49 Tachyzoite cDNA", "TgME49 invivo Bradyzoite cDNA (in vitro Bradyzoite; 6day)",
"TgME49 invivo Bradyzoite cDNA size selected", "TgME49cDNA (in vitro Bradyzoite; 6day)",
"TgRH Tachyzoite FL cDNA", "TgRH Tachyzoite Norm 1 cDNA Library",
"TgRH Tachyzoite Norm 5 cDNA Library", "TgRH Tachyzoite Norm 7 cDNA Library",
"TgRH Tachyzoite Subtracted cDNA Library", "TgRH Tachyzoite cDNA",
"TgRH*-Tachyzoite cDNA", "TgRHcDNA", "TgVEG Fully sporulated oocyst cDNA (Fully sporulated oocysts)",
"TgVEG Partially sporulated oocyst cDNA (Partially sporulated oocysts)",
"TgVEG-Tachyzoite cDNA", "TgVEG118 Tachyzoite cDNA Library",
"TgVEG118 Tachyzoite cDNA Library-2", "TgZAP-cDNA1 (tachyzoite)",
"Toxoplasma gondii", "Toxoplasma gondii Bradyzoite Library (Bradyzoite developmental stage)",
"Toxoplasma gondii Tachyzoite Library (Tachyzoite developmental stage)",
"Toxoplasma gondii encystation; subtracted cDNA", "Toxoplasma gondii mRNA (T.Koyama)",
"WatanabeTgRH (tachyzoites)", "differentially expressed gene in tachyzoite stage of Neospora caninum Korea isolate Nc-Kr2 (Tachy...",
"Cold-induced pseudocyst (TvCS) (Pseudocyst stage)", "Cot1000 normalized T1 cDNA library",
"Cot6 normalized T1 cDNA library", "Fibronectin-mediated cytoadherence (TvFN) (Amoeboid stage)",
"G2/M trophozoite (TvG2M) (G1/S phase)", "HMW C1 cDNA library",
"Low glucose culture (TvLG)", "Low iron culture (TvLI)", "Normal unsynchronized culture (TvEST) (Unsynchronized culture)",
"Trichomonas vaginalis", "VEC-mediated cytoadherence (TvVEC) (Amoeboid stage)",
"non-normalized T1 cDNA library", "Bloodstream form of serodeme ILTat1.1",
"Differentially expressed Trypanosoma brucei mRNAs", "Leishmania braziliensis",
"Leishmania braziliensis amastigote stage; 72 hours post infection",
"Leishmania braziliensis procyclic stage; logarithmic growth phase",
"Leishmania infantum", "Leishmania major", "Leishmania major Amastigote Lambda Zap II library",
"Leishmania major Amastigote full length cDNA library", "Leishmania major promastigote full length cDNA library from early logarithmic stage (day 3)",
"Leishmania major promastigote full length cDNA library from logarithmic stage (day 7)",
"Leishmania major promastigote full length cDNA library from stationary stage (day 10)",
"Leishmania mexicana", "LmLV39cDNA", "MVAT4 bloodstream form of serodeme WRATat1.1",
"Random insertions of transposon MosHYG in Leishmania major (promastigote)",
"SM-Lib-Tc Tehuantepec 17LER", "SM-Lib-Tc Tehuantepec 17WTS",
"SM-Lib-Tc Y BZR", "Stage-specific mRNA", "T. Cruzi epimastigote normalised cDNA Library",
"T. cruzi epimastigote normalised cDNA Library", "T. cruzi epimastigote normalized cDNA Library",
"T.cruzi epimastigote non-normalized cDNA Library", "T.cruzi epimastigote normalized cDNA Library",
"TcAM (amastigote-like)", "TcT-E (trypomastigote)", "TcTR (trypomastigote)",
"Trypanosoma brucei", "Trypanosoma brucei rhodesiense ZAP II library (Insect form)",
"Trypanosoma brucei strain 927 ESTs", "Trypanosoma congolense",
"Trypanosoma congolense isolate IL300 bloodstream stage", "Trypanosoma congolense isolate IL300 epimastigote stage",
"VARPB34A ( )", "VARPB34E ( )", "VARPB34F ( )", "VARPB34H ( )",
"VARPB35D ( )", "VARPB35F ( )", "VARPB35G ( )", "VARPB35H ( )",
"VARPB36C ( )", "VARPB36D ( )", "VARPB36H ( )", "VARPB39B ( )",
"VARPB39C ( )", "VARPB39D ( )", "VARPB39E ( )", "VARPB39G ( )",
"VARPB39H ( )", "VARPB3A ( )", "VARPB3B ( )", "VARPB3C ( )",
"VARPB3D ( )", "VARPB3E ( )", "VARPB3F ( )", "VARPB3G ( )", "VARPB3H ( )",
"VARPB40A ( )", "VARPB40D ( )", "VARPB40E ( )", "VARPB40F ( )",
"VARPB40G ( )", "VARPB40H ( )", "VARPB41F ( )", "VARPB42B ( )",
"VARPB42C ( )", "VARPB42D ( )", "VARPB42F ( )", "VARPB42G ( )",
"VARPB42H ( )", "VARPB43B ( )", "VARPB43C ( )", "VARPB43D ( )",
"VARPB43E ( )", "VARPB43F ( )", "VARPB43G ( )", "VARPB43H ( )",
"VARPB47E ( )", "VARPB47F ( )", "VARPB47G ( )", "VARPB48A ( )",
"VARPB48B ( )", "VARPB48C ( )", "VARPB48D ( )", "VARPB48E ( )",
"VARPB48G ( )", "VARPB48H ( )", "VARPB49F ( )", "VARPB49H ( )",
"VARPB4A ( )", "VARPB4B ( )", "VARPB4C ( )", "VARPB4D ( )", "VARPB4E ( )",
"VARPB4F ( )", "VARPB4G ( )", "VARPB4H ( )", "VARPB50E ( )",
"VARPB50F ( )", "VARPB50G ( )", "VARPB50H ( )", "VARPB51A ( )",
"VARPB51B ( )", "VARPB51F ( )", "VARPB51G ( )", "VARPB51H ( )",
"VARPB53A ( )", "VARPB53B ( )", "VARPB53C ( )", "VARPB53D ( )",
"VARPB53E ( )", "VARPB53F ( )", "VARPB53G ( )", "VARPB53H ( )",
"VARPB54A ( )", "VARPB54B ( )", "VARPB54C ( )", "VARPB54D ( )",
"VARPB54E ( )", "VARPB54F ( )", "VARPB54G ( )", "VARPB54H ( )",
"VARPB55A ( )", "VARPB55B ( )", "VARPB55C ( )", "VARPB55D ( )",
"VARPB55F ( )", "VARPB55G ( )", "VARPB55H ( )", "VARPB56A ( )",
"VARPB56B ( )", "VARPB56C ( )", "VARPB56D ( )", "VARPB56E ( )",
"VARPB56F ( )", "VARPB56G ( )", "VARPB56H ( )", "VARPB57A ( )",
"VARPB57B ( )", "VARPB57C ( )", "VARPB58A ( )", "VARPB58B ( )",
"VARPB58C ( )", "VARPB58D ( )", "VARPB58E ( )", "VARPB58F ( )",
"VARPB58G ( )", "VARPB58H ( )", "VARPB59A ( )", "VARPB59B ( )",
"VARPB59C ( )", "VARPB59D ( )", "VARPB59E ( )", "VARPB59F ( )",
"VARPB59G ( )", "VARPB59H ( )", "VARPB5A ( )", "VARPB5B ( )",
"VARPB5C ( )", "VARPB5D ( )", "VARPB5E ( )", "VARPB5F ( )", "VARPB5G ( )",
"VARPB5H ( )", "VARPB60A ( )", "VARPB60B ( )", "VARPB60C ( )",
"VARPB6A ( )", "VARPB6B ( )", "VARPB6C ( )", "VARPB6D ( )", "VARPB6E ( )",
"VARPB6F ( )", "VARPB6G ( )", "VARPB6H ( )", "VARPB7A ( )", "VARPB7B ( )",
"VARPB7C ( )", "VARPB7D ( )", "VARPB7E ( )", "VARPB7F ( )", "VARPB7G ( )",
"VARPB7H ( )", "VARPB8A ( )", "E. histolytica Normalized cDNA library",
"Entamoeba cDNA clone 6 (trophozoite)", "Entamoeba cDNA to mRNA (trophozoite)",
"Entamoeba dispar", "Entamoeba dispar cDNAs (trophozoite)", "Entamoeba histolytica",
"Entamoeba histolytica HM-1:IMSS", "Entamoeba histolytica HM-1:IMSS mRNA (Tomoo Tanaka) (trophozoite)",
"Entamoeba histolytica YS-27", "Entamoeba histolytica trophozoite",
"C. parvum KSU-1 normalized sporozoite", "Cryptosporidium muris",
"Cryptosporidium muris (strain RN66) cDNA library; stage oocyst",
"Cryptosporidium parvum", "Pooled Cryptosporidium parvum KSU-1 enriched 24-48hr post-infection; in-vitro non-normalized nano...",
"WatanabeCpHNJ-1 (oocyst)", "XCP Sugano cDNA library (sporozoite stage)",
"pSKIIminusCpIOWAsporoLib2 (sporozoite)", "uniZAPCpIOWAsporoLib1 (sporozoite)",
"uniZAPCpIOWAsporoLib3 (sporozoite)", "Giardia Assemblage", "Giardia lamblia trophozoite (Trophozoite)",
"trophozoite cDNA", "Encephalitozoon cuniculi", "RACE-PCR products from Encephalitozoon cuniculi (Dormant spores)",
"Blood stage Plasmodium falciparum cDNA library PFExtensions",
"Blood stage Plasmodium falciparum cDNA library PfBamH1", "Blood stage Plasmodium falciparum cDNA library PfSau3a",
"Blood stage Plasmodium falciparum cDNA library PfSuOrig", "Field isolate cDNA library",
"GenoScope Schizont enriched", "In vitro adapted parasite UAM52b Pf Ring stage var gene cDNA",
"In vitro adapted parasite UAM52b Pf Trophozoite stage var gene cDNA",
"In vitro adapted parasite UAS22b Pf Ring stage var gene cDNA",
"In vitro adapted parasite UAS22b Pf Trophozoite stage var gene cDNA",
"In vitro adapted parasite UAS29b Pf Ring stage var gene cDNA",
"In vitro adapted parasite UAS29b Pf Trophozoite stage var gene cDNA",
"In vitro adapted parasite UAS31b Pf Ring stage var gene cDNA",
"In vitro adapted parasite UAS31b Pf Trophozoite stage var gene cDNA",
"In vitro adapted parasite UAS41b Pf Ring stage var gene cDNA",
"In vitro adapted parasite UAS41b Pf Trophozoite stage var gene cDNA",
"Laboratory isolate 3D7AH1 Pf Ring stage var gene cDNA", "Laboratory isolate 3D7AH1 Pf Trophozoite stage var gene cDNA",
"Laboratory isolate 3D7AH1S.2 Pf Ring stage var gene cDNA", "Laboratory isolate 3D7AH1S.2 Pf Trophozoite stage var gene cDNA",
"Laboratory isolate 7G8 Pf Ring stage var gene cDNA", "Laboratory isolate 7G8 Pf Trophozoite stage var gene cDNA",
"Laboratory isolate DD2 Pf Ring stage var gene cDNA", "Laboratory isolate DD2 Pf Trophozoite stage var gene cDNA",
"Laboratory isolate FCR3 Pf Ring stage var gene cDNA", "Laboratory isolate FCR3 Pf Trophozoite stage var gene cDNA",
"Laboratory isolate FCR3s1.6 Pf Ring stage var gene cDNA", "Laboratory isolate FCR3s1.6 Pf Trophozoite stage var gene cDNA",
"Laboratory isolate TM284 Pf Ring stage var gene cDNA", "Laboratory isolate TM284 Pf Trophozoite stage var gene cDNA",
"Pb cDNA #17; Tommaso Pace; Marta Ponzi; and Clara Frontali (asynchronous blood stage)",
"Pb cDNA #20; Charles Yowell and Jane Carlton (asynchronous blood stage)",
"Pb sgSpz/ooSpz subtraction library", "Plasmodium berghei", "Plasmodium berghei NK65 salivary gland sporozoite",
"Plasmodium berghei cDNA library", "Plasmodium berghei erythrocytic schizont",
"Plasmodium berghei liver stage parasite", "Plasmodium berghei midgut sporozoite",
"Plasmodium berghei ookinete", "Plasmodium berghei ookinete stage",
"Plasmodium berghei salivary grand sporozoite (salivary gland sporozoite)",
"Plasmodium berghei strain ANKA erythrocytic stage", "Plasmodium falciparum",
"Plasmodium falciparum 3D7 asexual cDNA", "Plasmodium falciparum 3D7 gametocyte cDNA library (gametocyte (stage III-V))",
"Plasmodium falciparum FCB1 schizont", "Plasmodium falciparum FcB1 schizont",
"Plasmodium falciparum NF54 (D.A.Fidock) (asynchronous asexual blood stage)",
"Plasmodium falciparum cDNA pUC8 Express Library (late erythrocytic-stage parasite mRNA)",
"Plasmodium vivax", "Plasmodium yoelii", "Plasmodium yoelii liver stage LCM cDNA library (40 hour liver schizont)",
"Plasmodium yoelii sporozoite cDNA (sporozoites from salivary gland)",
"Plasmodium yoelii yoelii from Anopheles stephensi midgut (oocyst)",
"Plasmodium yoelli 17X axenic hepatic stages", "PvBEcDNA (Assexual Blood Stages)",
"PyBS (Asexual blood stages)", "SSH library of Plasmodium berghei strain K173 (erythrocytic stage)",
"SSH library of Plasmodium berghei strain RQ (erythrocytic stage)",
"Sugano Malaria cDNA library (erythrocytic stage)", "Ugandan isolate UAM05 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM08 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM09 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM11 Pf var gene cDNA (Trophozoite)", "Trypanosoma congolense isolate IL300 metacyclic stage",
"Trypanosoma congolense isolate IL300 normalised bloodstream stage",
"Trypanosoma congolense isolate IL300 normalised metacyclic stage",
"Trypanosoma congolense isolate IL300 procyclic stage", "Trypanosoma cruzi",
"Trypanosoma cruzi CL Brener epimastigote", "Trypanosoma cruzi Y (Tomoo Tanaka)",
"Trypanosoma cruzi amastigote cDNA library", "Trypanosoma cruzi differential display cDNA library",
"page (promastigote)", "sucrose-gradient-F23 (promastigote)",
"sucrose-gradient-F25 (promastigote)")
EstsByLibrary =
function(
`libraryId` = 'E. histolytica Normalized cDNA library,Entamoeba cDNA clone 6 (trophozoite),Entamoeba cDNA to mRNA (trophozoite),Entamoeba dispar,Entamoeba dispar cDNAs (trophozoite),Entamoeba histolytica,Entamoeba histolytica HM-1:IMSS,Entamoeba histolytica HM-1:IMSS mRNA (Tomoo Tanaka) (trophozoite),Entamoeba histolytica YS-27,Entamoeba histolytica trophozoite,C. parvum KSU-1 normalized sporozoite,Cryptosporidium muris,Cryptosporidium muris (strain RN66) cDNA library; stage oocyst,Cryptosporidium parvum,Pooled Cryptosporidium parvum KSU-1 enriched 24-48hr post-infection; in-vitro non-normalized nano...,WatanabeCpHNJ-1 (oocyst),XCP Sugano cDNA library (sporozoite stage),pSKIIminusCpIOWAsporoLib2 (sporozoite),uniZAPCpIOWAsporoLib1 (sporozoite),uniZAPCpIOWAsporoLib3 (sporozoite),Giardia Assemblage,Giardia lamblia trophozoite (Trophozoite),trophozoite cDNA,Encephalitozoon cuniculi,RACE-PCR products from Encephalitozoon cuniculi (Dormant spores),Blood stage Plasmodium falciparum cDNA library PFExtensions,Blood stage Plasmodium falciparum cDNA library PfBamH1,Blood stage Plasmodium falciparum cDNA library PfSau3a,Blood stage Plasmodium falciparum cDNA library PfSuOrig,Field isolate cDNA library,GenoScope Schizont enriched,In vitro adapted parasite UAM52b Pf Ring stage var gene cDNA,In vitro adapted parasite UAM52b Pf Trophozoite stage var gene cDNA,In vitro adapted parasite UAS22b Pf Ring stage var gene cDNA,In vitro adapted parasite UAS22b Pf Trophozoite stage var gene cDNA,In vitro adapted parasite UAS29b Pf Ring stage var gene cDNA,In vitro adapted parasite UAS29b Pf Trophozoite stage var gene cDNA,In vitro adapted parasite UAS31b Pf Ring stage var gene cDNA,In vitro adapted parasite UAS31b Pf Trophozoite stage var gene cDNA,In vitro adapted parasite UAS41b Pf Ring stage var gene cDNA,In vitro adapted parasite UAS41b Pf Trophozoite stage var gene cDNA,Laboratory isolate 3D7AH1 Pf Ring stage var gene cDNA,Laboratory isolate 3D7AH1 Pf Trophozoite stage var gene cDNA,Laboratory isolate 3D7AH1S.2 Pf Ring stage var gene cDNA,Laboratory isolate 3D7AH1S.2 Pf Trophozoite stage var gene cDNA,Laboratory isolate 7G8 Pf Ring stage var gene cDNA,Laboratory isolate 7G8 Pf Trophozoite stage var gene cDNA,Laboratory isolate DD2 Pf Ring stage var gene cDNA,Laboratory isolate DD2 Pf Trophozoite stage var gene cDNA,Laboratory isolate FCR3 Pf Ring stage var gene cDNA,Laboratory isolate FCR3 Pf Trophozoite stage var gene cDNA,Laboratory isolate FCR3s1.6 Pf Ring stage var gene cDNA,Laboratory isolate FCR3s1.6 Pf Trophozoite stage var gene cDNA,Laboratory isolate TM284 Pf Ring stage var gene cDNA,Laboratory isolate TM284 Pf Trophozoite stage var gene cDNA,Pb cDNA #17; Tommaso Pace; Marta Ponzi; and Clara Frontali (asynchronous blood stage),Pb cDNA #20; Charles Yowell and Jane Carlton (asynchronous blood stage),Pb sgSpz/ooSpz subtraction library,Plasmodium berghei,Plasmodium berghei NK65 salivary gland sporozoite,Plasmodium berghei cDNA library,Plasmodium berghei erythrocytic schizont,Plasmodium berghei liver stage parasite,Plasmodium berghei midgut sporozoite,Plasmodium berghei ookinete,Plasmodium berghei ookinete stage,Plasmodium berghei salivary grand sporozoite (salivary gland sporozoite),Plasmodium berghei strain ANKA erythrocytic stage,Plasmodium falciparum,Plasmodium falciparum 3D7 asexual cDNA,Plasmodium falciparum 3D7 gametocyte cDNA library (gametocyte (stage III-V)),Plasmodium falciparum FCB1 schizont,Plasmodium falciparum FcB1 schizont,Plasmodium falciparum NF54 (D.A.Fidock) (asynchronous asexual blood stage),Plasmodium falciparum cDNA pUC8 Express Library (late erythrocytic-stage parasite mRNA),Plasmodium vivax,Plasmodium yoelii,Plasmodium yoelii liver stage LCM cDNA library (40 hour liver schizont),Plasmodium yoelii sporozoite cDNA (sporozoites from salivary gland),Plasmodium yoelii yoelii from Anopheles stephensi midgut (oocyst),Plasmodium yoelli 17X axenic hepatic stages,PvBEcDNA (Assexual Blood Stages),PyBS (Asexual blood stages),SSH library of Plasmodium berghei strain K173 (erythrocytic stage),SSH library of Plasmodium berghei strain RQ (erythrocytic stage),Sugano Malaria cDNA library (erythrocytic stage),Ugandan isolate UAM05 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM08 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM09 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM11 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM12 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM13 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM14 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM15 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM16 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM17 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM18 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM20 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM21 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM22 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM23 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM25 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM26 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM27 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM28 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM29 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM31 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM32 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM33 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM34 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM35 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM36 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM37 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM38 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM39 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM40 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM41 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM42 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM43 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM44 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM45 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM46 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM47 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM48 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM49 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM50 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM51 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM52 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM53 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS03 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS06 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS07 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS08 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS10 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS11 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS12 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS13 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS14 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS16 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS17 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS18 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS19 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS20 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS21 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS22 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS23 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS24 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS25 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS26 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS27 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS28 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS29 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS31 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS32 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS33 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS34 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS36 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS37 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS38 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS39 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS40 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS41 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS43 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS44 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS45 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS46 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS47 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS48 Pf var gene cDNA (Trophozoite),Ugandan isolate UKM19 Pf Ring stage var gene cDNA,Ugandan isolate UKM19 Pf Trophozoite stage var gene cDNA,Ugandan isolate UKM64 Pf Ring stage var gene cDNA,Ugandan isolate UKM64 Pf Trophozoite stage var gene cDNA,Ugandan isolate UKS1 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS10 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS12 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS13 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS14 Pf Ring stage var gene cDNA,Ugandan isolate UKS14 Pf Trophozoite stage var gene cDNA,Ugandan isolate UKS14 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS15 Pf Ring stage var gene cDNA,Ugandan isolate UKS15 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS17 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS2 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS25 Pf Ring stage var gene cDNA,Ugandan isolate UKS25 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS3 Pf Ring stage var gene cDNA,Ugandan isolate UKS3 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS4 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS47 Pf Ring stage var gene cDNA,Ugandan isolate UKS47 Pf Trophozoite stage var gene cDNA,Ugandan isolate UKS5 Pf Ring stage var gene cDNA,Ugandan isolate UKS5 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS7 Pf Ring stage var gene cDNA,Ugandan isolate UKS7 Pf Trophozoite stage var gene cDNA,Ugandan isolate UKS7 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS9 Pf var gene cDNA (Trophozoite),VARPB11A ( ),VARPB11B ( ),VARPB13A ( ),VARPB13C ( ),VARPB13D ( ),VARPB13G ( ),VARPB13H ( ),VARPB14A ( ),VARPB14B ( ),VARPB14C ( ),VARPB14D ( ),VARPB15A ( ),VARPB15C ( ),VARPB15E ( ),VARPB16A ( ),VARPB16G ( ),VARPB17A ( ),VARPB17D ( ),VARPB17G ( ),VARPB18A ( ),VARPB18C ( ),VARPB18F ( ),VARPB18H ( ),VARPB19B ( ),VARPB19D ( ),VARPB19H ( ),VARPB1C ( ),VARPB1D ( ),VARPB1E ( ),VARPB1F ( ),VARPB1G ( ),VARPB1H ( ),VARPB20B ( ),VARPB20D ( ),VARPB20F ( ),VARPB20G ( ),VARPB21A ( ),VARPB21B ( ),VARPB21E ( ),VARPB21G ( ),VARPB21H ( ),VARPB22A ( ),VARPB22B ( ),VARPB22C ( ),VARPB22D ( ),VARPB22E ( ),VARPB22F ( ),VARPB22G ( ),VARPB22H ( ),VARPB23B ( ),VARPB23D ( ),VARPB23E ( ),VARPB23F ( ),VARPB23G ( ),VARPB23H ( ),VARPB24A ( ),VARPB24B ( ),VARPB24C ( ),VARPB24D ( ),VARPB24E ( ),VARPB24G ( ),VARPB24H ( ),VARPB25A ( ),VARPB25B ( ),VARPB25C ( ),VARPB25E ( ),VARPB25F ( ),VARPB25G ( ),VARPB26B ( ),VARPB26D ( ),VARPB26E ( ),VARPB26F ( ),VARPB26G ( ),VARPB26H ( ),VARPB27A ( ),VARPB27B ( ),VARPB27C ( ),VARPB27D ( ),VARPB27E ( ),VARPB27F ( ),VARPB27G ( ),VARPB27H ( ),VARPB28A ( ),VARPB28B ( ),VARPB28C ( ),VARPB28E ( ),VARPB28F ( ),VARPB28G ( ),VARPB29A ( ),VARPB29B ( ),VARPB29C ( ),VARPB29E ( ),VARPB29F ( ),VARPB29G ( ),VARPB29H ( ),VARPB2A ( ),VARPB2D ( ),VARPB2E ( ),VARPB2F ( ),VARPB30A ( ),VARPB31A ( ),VARPB31B ( ),VARPB31D ( ),VARPB31F ( ),VARPB31G ( ),VARPB31H ( ),VARPB32C ( ),VARPB32F ( ),VARPB34A ( ),VARPB34E ( ),VARPB34F ( ),VARPB34H ( ),VARPB35D ( ),VARPB35F ( ),VARPB35G ( ),VARPB35H ( ),VARPB36C ( ),VARPB36D ( ),VARPB36H ( ),VARPB39B ( ),VARPB39C ( ),VARPB39D ( ),VARPB39E ( ),VARPB39G ( ),VARPB39H ( ),VARPB3A ( ),VARPB3B ( ),VARPB3C ( ),VARPB3D ( ),VARPB3E ( ),VARPB3F ( ),VARPB3G ( ),VARPB3H ( ),VARPB40A ( ),VARPB40D ( ),VARPB40E ( ),VARPB40F ( ),VARPB40G ( ),VARPB40H ( ),VARPB41F ( ),VARPB42B ( ),VARPB42C ( ),VARPB42D ( ),VARPB42F ( ),VARPB42G ( ),VARPB42H ( ),VARPB43B ( ),VARPB43C ( ),VARPB43D ( ),VARPB43E ( ),VARPB43F ( ),VARPB43G ( ),VARPB43H ( ),VARPB47E ( ),VARPB47F ( ),VARPB47G ( ),VARPB48A ( ),VARPB48B ( ),VARPB48C ( ),VARPB48D ( ),VARPB48E ( ),VARPB48G ( ),VARPB48H ( ),VARPB49F ( ),VARPB49H ( ),VARPB4A ( ),VARPB4B ( ),VARPB4C ( ),VARPB4D ( ),VARPB4E ( ),VARPB4F ( ),VARPB4G ( ),VARPB4H ( ),VARPB50E ( ),VARPB50F ( ),VARPB50G ( ),VARPB50H ( ),VARPB51A ( ),VARPB51B ( ),VARPB51F ( ),VARPB51G ( ),VARPB51H ( ),VARPB53A ( ),VARPB53B ( ),VARPB53C ( ),VARPB53D ( ),VARPB53E ( ),VARPB53F ( ),VARPB53G ( ),VARPB53H ( ),VARPB54A ( ),VARPB54B ( ),VARPB54C ( ),VARPB54D ( ),VARPB54E ( ),VARPB54F ( ),VARPB54G ( ),VARPB54H ( ),VARPB55A ( ),VARPB55B ( ),VARPB55C ( ),VARPB55D ( ),VARPB55F ( ),VARPB55G ( ),VARPB55H ( ),VARPB56A ( ),VARPB56B ( ),VARPB56C ( ),VARPB56D ( ),VARPB56E ( ),VARPB56F ( ),VARPB56G ( ),VARPB56H ( ),VARPB57A ( ),VARPB57B ( ),VARPB57C ( ),VARPB58A ( ),VARPB58B ( ),VARPB58C ( ),VARPB58D ( ),VARPB58E ( ),VARPB58F ( ),VARPB58G ( ),VARPB58H ( ),VARPB59A ( ),VARPB59B ( ),VARPB59C ( ),VARPB59D ( ),VARPB59E ( ),VARPB59F ( ),VARPB59G ( ),VARPB59H ( ),VARPB5A ( ),VARPB5B ( ),VARPB5C ( ),VARPB5D ( ),VARPB5E ( ),VARPB5F ( ),VARPB5G ( ),VARPB5H ( ),VARPB60A ( ),VARPB60B ( ),VARPB60C ( ),VARPB6A ( ),VARPB6B ( ),VARPB6C ( ),VARPB6D ( ),VARPB6E ( ),VARPB6F ( ),VARPB6G ( ),VARPB6H ( ),VARPB7A ( ),VARPB7B ( ),VARPB7C ( ),VARPB7D ( ),VARPB7E ( ),VARPB7F ( ),VARPB7G ( ),VARPB7H ( ),VARPB8A ( ),VARPB8B ( ),VARPB8C ( ),VARPB8D ( ),VARPB8F ( ),VARPB8G ( ),VARPB8H ( ),VARPB9A ( ),VARPB9B ( ),VARPB9C ( ),VARPB9H ( ),WatanabePf3D7_cultured,WatanabePv,WatanabePy17XL,XPB Sugano cDNA library (erythrocytic stage),XPF Sugano cDNA library (erythrocytic stage),XPV Sugano cDNA library (erythrocytic stage),XPYs Sugano cDNA library (erythrocytic stage),XPYw Sugano cDNA library (erythrocytic stage),Zhang/Gardner Pf 3D7 mixed asexual (Asexual stage),cbsPfHB3.1; Debopam Chakrabarti,czapPFDd2.1; Debopam Chakrabarti,ookinete library (12 h; 18h and 24 h after in vitro culture),Nc 1314 Tachyzoite cDNA,Nc-1 Tachyzoite cDNA Library,Nc-1 Tachyzoite cDNA Library 2,Nc-1 pZ Tachyzoite cDNA Library,Nc-1Tachyzoite cDNA,Nc-LIV Tachyzoite cDNA Library,Neospora caninum,Neospora caninum Lambda Zap cDNA library,RH tachyzoite cDNA library,Tg CAST Tachyzoite cDNA Library,Tg CAST Tachyzoite cDNA Library 2,Tg COUG Tachyzoite cDNA Library,TgMAS Tachyzoite cDNA Library,TgME49 3 day invitro bradyzoite,TgME49 B7 Tachyzoite cDNA Library 1,TgME49 B7 Tachyzoite cDNA Library 2,TgME49 Tachyzoite cDNA,TgME49 invivo Bradyzoite cDNA (in vitro Bradyzoite; 6day),TgME49 invivo Bradyzoite cDNA size selected,TgME49cDNA (in vitro Bradyzoite; 6day),TgRH Tachyzoite FL cDNA,TgRH Tachyzoite Norm 1 cDNA Library,TgRH Tachyzoite Norm 5 cDNA Library,TgRH Tachyzoite Norm 7 cDNA Library,TgRH Tachyzoite Subtracted cDNA Library,TgRH Tachyzoite cDNA,TgRH*-Tachyzoite cDNA,TgRHcDNA,TgVEG Fully sporulated oocyst cDNA (Fully sporulated oocysts),TgVEG Partially sporulated oocyst cDNA (Partially sporulated oocysts),TgVEG-Tachyzoite cDNA,TgVEG118 Tachyzoite cDNA Library,TgVEG118 Tachyzoite cDNA Library-2,TgZAP-cDNA1 (tachyzoite),Toxoplasma gondii,Toxoplasma gondii Bradyzoite Library (Bradyzoite developmental stage),Toxoplasma gondii Tachyzoite Library (Tachyzoite developmental stage),Toxoplasma gondii encystation; subtracted cDNA,Toxoplasma gondii mRNA (T.Koyama),WatanabeTgRH (tachyzoites),differentially expressed gene in tachyzoite stage of Neospora caninum Korea isolate Nc-Kr2 (Tachy...,Cold-induced pseudocyst (TvCS) (Pseudocyst stage),Cot1000 normalized T1 cDNA library,Cot6 normalized T1 cDNA library,Fibronectin-mediated cytoadherence (TvFN) (Amoeboid stage),G2/M trophozoite (TvG2M) (G1/S phase),HMW C1 cDNA library,Low glucose culture (TvLG),Low iron culture (TvLI),Normal unsynchronized culture (TvEST) (Unsynchronized culture),Trichomonas vaginalis,VEC-mediated cytoadherence (TvVEC) (Amoeboid stage),non-normalized T1 cDNA library,Bloodstream form of serodeme ILTat1.1,Differentially expressed Trypanosoma brucei mRNAs,Leishmania braziliensis,Leishmania braziliensis amastigote stage; 72 hours post infection,Leishmania braziliensis procyclic stage; logarithmic growth phase,Leishmania infantum,Leishmania major,Leishmania major Amastigote Lambda Zap II library,Leishmania major Amastigote full length cDNA library,Leishmania major promastigote full length cDNA library from early logarithmic stage (day 3),Leishmania major promastigote full length cDNA library from logarithmic stage (day 7),Leishmania major promastigote full length cDNA library from stationary stage (day 10),Leishmania mexicana,LmLV39cDNA,MVAT4 bloodstream form of serodeme WRATat1.1,Random insertions of transposon MosHYG in Leishmania major (promastigote),SM-Lib-Tc Tehuantepec 17LER,SM-Lib-Tc Tehuantepec 17WTS,SM-Lib-Tc Y BZR,Stage-specific mRNA,T. Cruzi epimastigote normalised cDNA Library,T. cruzi epimastigote normalised cDNA Library,T. cruzi epimastigote normalized cDNA Library,T.cruzi epimastigote non-normalized cDNA Library,T.cruzi epimastigote normalized cDNA Library,TcAM (amastigote-like),TcT-E (trypomastigote),TcTR (trypomastigote),Trypanosoma brucei,Trypanosoma brucei rhodesiense ZAP II library (Insect form),Trypanosoma brucei strain 927 ESTs,Trypanosoma congolense,Trypanosoma congolense isolate IL300 bloodstream stage,Trypanosoma congolense isolate IL300 epimastigote stage,Trypanosoma congolense isolate IL300 metacyclic stage,Trypanosoma congolense isolate IL300 normalised bloodstream stage,Trypanosoma congolense isolate IL300 normalised metacyclic stage,Trypanosoma congolense isolate IL300 procyclic stage,Trypanosoma cruzi,Trypanosoma cruzi CL Brener epimastigote,Trypanosoma cruzi Y (Tomoo Tanaka),Trypanosoma cruzi amastigote cDNA library,Trypanosoma cruzi differential display cDNA library,page (promastigote),sucrose-gradient-F23 (promastigote),sucrose-gradient-F25 (promastigote)', `o-fields` = 'NULL', `o-tables` = 'NULL', ..., .url = if(.json) 'http://eupathdb.org/eupathdb/webservices/EstQuestions/EstsByLibrary.json' else 'http://eupathdb.org/eupathdb/webservices/EstQuestions/EstsByLibrary.xml', .convert = NULL, .json = TRUE
)
{
`libraryId` <- checkValues(`libraryId`, "`EstsByLibrary.libraryId.options`", 'libraryId', TRUE)
if(!missing(`o-fields`)) `o-fields` <- checkValues(`o-fields`, c("all", "none", "primary_key", "organism", "length", "dbest_name",
"assembly_source_id", "vector", "stage", "organism_text", "ncbi_tax_id",
"sequence", "wdk_weight"), 'o-fields', TRUE)
if(!missing(`o-tables`)) `o-tables` <- checkValues(`o-tables`, c("all", "none"), 'o-tables', TRUE)
params = list(
'libraryId' = `libraryId`
)
if(!missing(`o-fields`))
params[['o-fields']] = `o-fields`
if(!missing(`o-tables`))
params[['o-tables']] = `o-tables`
ans = getForm(.url, .params = params, ...)
if(is.null(.convert) && .json) return(fromJSON(ans))
if(!is.null(.convert))
.convert(ans)
else if(!is.null(type <- attr(ans, 'Content-Type')) && type == 'text/json')
convertJSON(ans)
else
ans
}
`EstsByLibrary.libraryId.options` =
c("E. histolytica Normalized cDNA library", "Entamoeba cDNA clone 6 (trophozoite)",
"Entamoeba cDNA to mRNA (trophozoite)", "Entamoeba dispar", "Entamoeba dispar cDNAs (trophozoite)",
"Entamoeba histolytica", "Entamoeba histolytica HM-1:IMSS", "Entamoeba histolytica HM-1:IMSS mRNA (Tomoo Tanaka) (trophozoite)",
"Entamoeba histolytica YS-27", "Entamoeba histolytica trophozoite",
"C. parvum KSU-1 normalized sporozoite", "Cryptosporidium muris",
"Cryptosporidium muris (strain RN66) cDNA library; stage oocyst",
"Cryptosporidium parvum", "Pooled Cryptosporidium parvum KSU-1 enriched 24-48hr post-infection; in-vitro non-normalized nano...",
"WatanabeCpHNJ-1 (oocyst)", "XCP Sugano cDNA library (sporozoite stage)",
"pSKIIminusCpIOWAsporoLib2 (sporozoite)", "uniZAPCpIOWAsporoLib1 (sporozoite)",
"uniZAPCpIOWAsporoLib3 (sporozoite)", "Giardia Assemblage", "Giardia lamblia trophozoite (Trophozoite)",
"trophozoite cDNA", "Encephalitozoon cuniculi", "RACE-PCR products from Encephalitozoon cuniculi (Dormant spores)",
"Blood stage Plasmodium falciparum cDNA library PFExtensions",
"Blood stage Plasmodium falciparum cDNA library PfBamH1", "Blood stage Plasmodium falciparum cDNA library PfSau3a",
"Blood stage Plasmodium falciparum cDNA library PfSuOrig", "Field isolate cDNA library",
"GenoScope Schizont enriched", "In vitro adapted parasite UAM52b Pf Ring stage var gene cDNA",
"In vitro adapted parasite UAM52b Pf Trophozoite stage var gene cDNA",
"In vitro adapted parasite UAS22b Pf Ring stage var gene cDNA",
"In vitro adapted parasite UAS22b Pf Trophozoite stage var gene cDNA",
"In vitro adapted parasite UAS29b Pf Ring stage var gene cDNA",
"In vitro adapted parasite UAS29b Pf Trophozoite stage var gene cDNA",
"In vitro adapted parasite UAS31b Pf Ring stage var gene cDNA",
"In vitro adapted parasite UAS31b Pf Trophozoite stage var gene cDNA",
"In vitro adapted parasite UAS41b Pf Ring stage var gene cDNA",
"In vitro adapted parasite UAS41b Pf Trophozoite stage var gene cDNA",
"Laboratory isolate 3D7AH1 Pf Ring stage var gene cDNA", "Laboratory isolate 3D7AH1 Pf Trophozoite stage var gene cDNA",
"Laboratory isolate 3D7AH1S.2 Pf Ring stage var gene cDNA", "Laboratory isolate 3D7AH1S.2 Pf Trophozoite stage var gene cDNA",
"Laboratory isolate 7G8 Pf Ring stage var gene cDNA", "Laboratory isolate 7G8 Pf Trophozoite stage var gene cDNA",
"Laboratory isolate DD2 Pf Ring stage var gene cDNA", "Laboratory isolate DD2 Pf Trophozoite stage var gene cDNA",
"Laboratory isolate FCR3 Pf Ring stage var gene cDNA", "Laboratory isolate FCR3 Pf Trophozoite stage var gene cDNA",
"Laboratory isolate FCR3s1.6 Pf Ring stage var gene cDNA", "Laboratory isolate FCR3s1.6 Pf Trophozoite stage var gene cDNA",
"Laboratory isolate TM284 Pf Ring stage var gene cDNA", "Laboratory isolate TM284 Pf Trophozoite stage var gene cDNA",
"Pb cDNA #17; Tommaso Pace; Marta Ponzi; and Clara Frontali (asynchronous blood stage)",
"Pb cDNA #20; Charles Yowell and Jane Carlton (asynchronous blood stage)",
"Pb sgSpz/ooSpz subtraction library", "Plasmodium berghei", "Plasmodium berghei NK65 salivary gland sporozoite",
"Plasmodium berghei cDNA library", "Plasmodium berghei erythrocytic schizont",
"Plasmodium berghei liver stage parasite", "Plasmodium berghei midgut sporozoite",
"Plasmodium berghei ookinete", "Plasmodium berghei ookinete stage",
"Plasmodium berghei salivary grand sporozoite (salivary gland sporozoite)",
"Plasmodium berghei strain ANKA erythrocytic stage", "Plasmodium falciparum",
"Plasmodium falciparum 3D7 asexual cDNA", "Plasmodium falciparum 3D7 gametocyte cDNA library (gametocyte (stage III-V))",
"Plasmodium falciparum FCB1 schizont", "Plasmodium falciparum FcB1 schizont",
"Plasmodium falciparum NF54 (D.A.Fidock) (asynchronous asexual blood stage)",
"Plasmodium falciparum cDNA pUC8 Express Library (late erythrocytic-stage parasite mRNA)",
"Plasmodium vivax", "Plasmodium yoelii", "Plasmodium yoelii liver stage LCM cDNA library (40 hour liver schizont)",
"Plasmodium yoelii sporozoite cDNA (sporozoites from salivary gland)",
"Plasmodium yoelii yoelii from Anopheles stephensi midgut (oocyst)",
"Plasmodium yoelli 17X axenic hepatic stages", "PvBEcDNA (Assexual Blood Stages)",
"PyBS (Asexual blood stages)", "SSH library of Plasmodium berghei strain K173 (erythrocytic stage)",
"SSH library of Plasmodium berghei strain RQ (erythrocytic stage)",
"Sugano Malaria cDNA library (erythrocytic stage)", "Ugandan isolate UAM05 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM08 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM09 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM11 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM12 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM13 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM14 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM15 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM16 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM17 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM18 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM20 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM21 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM22 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM23 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM25 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM26 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM27 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM28 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM29 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM31 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM32 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM33 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM34 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM35 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM36 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM37 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM38 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM39 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM40 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM41 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM42 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM43 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM44 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM45 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM46 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM47 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM48 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM49 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM50 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM51 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM52 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM53 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS03 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS06 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS07 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS08 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS10 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS11 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS12 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS13 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS14 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS16 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS17 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS18 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS19 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS20 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS21 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS22 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS23 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS24 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS25 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS26 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS27 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS28 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS29 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS31 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS32 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS33 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS34 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS36 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS37 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS38 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS39 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS40 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS41 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS43 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS44 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS45 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS46 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS47 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS48 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKM19 Pf Ring stage var gene cDNA",
"Ugandan isolate UKM19 Pf Trophozoite stage var gene cDNA", "Ugandan isolate UKM64 Pf Ring stage var gene cDNA",
"Ugandan isolate UKM64 Pf Trophozoite stage var gene cDNA", "Ugandan isolate UKS1 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS10 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKS12 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS13 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKS14 Pf Ring stage var gene cDNA",
"Ugandan isolate UKS14 Pf Trophozoite stage var gene cDNA", "Ugandan isolate UKS14 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS15 Pf Ring stage var gene cDNA", "Ugandan isolate UKS15 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS17 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKS2 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS25 Pf Ring stage var gene cDNA", "Ugandan isolate UKS25 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS3 Pf Ring stage var gene cDNA", "Ugandan isolate UKS3 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS4 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKS47 Pf Ring stage var gene cDNA",
"Ugandan isolate UKS47 Pf Trophozoite stage var gene cDNA", "Ugandan isolate UKS5 Pf Ring stage var gene cDNA",
"Ugandan isolate UKS5 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKS7 Pf Ring stage var gene cDNA",
"Ugandan isolate UKS7 Pf Trophozoite stage var gene cDNA", "Ugandan isolate UKS7 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS9 Pf var gene cDNA (Trophozoite)", "VARPB11A ( )",
"VARPB11B ( )", "VARPB13A ( )", "VARPB13C ( )", "VARPB13D ( )",
"VARPB13G ( )", "VARPB13H ( )", "VARPB14A ( )", "VARPB14B ( )",
"VARPB14C ( )", "VARPB14D ( )", "VARPB15A ( )", "VARPB15C ( )",
"VARPB15E ( )", "VARPB16A ( )", "VARPB16G ( )", "VARPB17A ( )",
"VARPB17D ( )", "VARPB17G ( )", "VARPB18A ( )", "VARPB18C ( )",
"VARPB18F ( )", "VARPB18H ( )", "VARPB19B ( )", "VARPB19D ( )",
"VARPB19H ( )", "VARPB1C ( )", "VARPB1D ( )", "VARPB1E ( )",
"VARPB1F ( )", "VARPB1G ( )", "VARPB1H ( )", "VARPB20B ( )",
"VARPB20D ( )", "VARPB20F ( )", "VARPB20G ( )", "VARPB21A ( )",
"VARPB21B ( )", "VARPB21E ( )", "VARPB21G ( )", "VARPB21H ( )",
"VARPB22A ( )", "VARPB22B ( )", "VARPB22C ( )", "VARPB22D ( )",
"VARPB22E ( )", "VARPB22F ( )", "VARPB22G ( )", "VARPB22H ( )",
"VARPB23B ( )", "VARPB23D ( )", "VARPB23E ( )", "VARPB23F ( )",
"VARPB23G ( )", "VARPB23H ( )", "VARPB24A ( )", "VARPB24B ( )",
"VARPB24C ( )", "VARPB24D ( )", "VARPB24E ( )", "VARPB24G ( )",
"VARPB24H ( )", "VARPB25A ( )", "VARPB25B ( )", "VARPB25C ( )",
"VARPB25E ( )", "VARPB25F ( )", "VARPB25G ( )", "VARPB26B ( )",
"VARPB26D ( )", "VARPB26E ( )", "VARPB26F ( )", "VARPB26G ( )",
"VARPB26H ( )", "VARPB27A ( )", "VARPB27B ( )", "VARPB27C ( )",
"VARPB27D ( )", "VARPB27E ( )", "VARPB27F ( )", "VARPB27G ( )",
"VARPB27H ( )", "VARPB28A ( )", "VARPB28B ( )", "VARPB28C ( )",
"VARPB28E ( )", "VARPB28F ( )", "VARPB28G ( )", "VARPB29A ( )",
"VARPB29B ( )", "VARPB29C ( )", "VARPB29E ( )", "VARPB29F ( )",
"VARPB29G ( )", "VARPB29H ( )", "VARPB2A ( )", "VARPB2D ( )",
"VARPB2E ( )", "VARPB2F ( )", "VARPB30A ( )", "VARPB31A ( )",
"VARPB31B ( )", "VARPB31D ( )", "VARPB31F ( )", "VARPB31G ( )",
"VARPB31H ( )", "VARPB32C ( )", "VARPB32F ( )", "VARPB34A ( )",
"VARPB34E ( )", "VARPB34F ( )", "VARPB34H ( )", "VARPB35D ( )",
"VARPB35F ( )", "VARPB35G ( )", "VARPB35H ( )", "VARPB36C ( )",
"VARPB36D ( )", "VARPB36H ( )", "VARPB39B ( )", "VARPB39C ( )",
"VARPB39D ( )", "VARPB39E ( )", "VARPB39G ( )", "VARPB39H ( )",
"VARPB3A ( )", "VARPB3B ( )", "VARPB3C ( )", "VARPB3D ( )", "VARPB3E ( )",
"VARPB3F ( )", "VARPB3G ( )", "VARPB3H ( )", "VARPB40A ( )",
"VARPB40D ( )", "VARPB40E ( )", "VARPB40F ( )", "VARPB40G ( )",
"VARPB40H ( )", "VARPB41F ( )", "VARPB42B ( )", "VARPB42C ( )",
"VARPB42D ( )", "VARPB42F ( )", "VARPB42G ( )", "VARPB42H ( )",
"VARPB43B ( )", "VARPB43C ( )", "VARPB43D ( )", "VARPB43E ( )",
"VARPB43F ( )", "VARPB43G ( )", "VARPB43H ( )", "VARPB47E ( )",
"VARPB47F ( )", "VARPB47G ( )", "VARPB48A ( )", "VARPB48B ( )",
"VARPB48C ( )", "VARPB48D ( )", "VARPB48E ( )", "VARPB48G ( )",
"VARPB48H ( )", "VARPB49F ( )", "VARPB49H ( )", "VARPB4A ( )",
"VARPB4B ( )", "VARPB4C ( )", "VARPB4D ( )", "VARPB4E ( )", "VARPB4F ( )",
"VARPB4G ( )", "VARPB4H ( )", "VARPB50E ( )", "VARPB50F ( )",
"VARPB50G ( )", "VARPB50H ( )", "VARPB51A ( )", "VARPB51B ( )",
"VARPB51F ( )", "VARPB51G ( )", "VARPB51H ( )", "VARPB53A ( )",
"VARPB53B ( )", "VARPB53C ( )", "VARPB53D ( )", "VARPB53E ( )",
"VARPB53F ( )", "VARPB53G ( )", "VARPB53H ( )", "VARPB54A ( )",
"VARPB54B ( )", "VARPB54C ( )", "VARPB54D ( )", "VARPB54E ( )",
"VARPB54F ( )", "VARPB54G ( )", "VARPB54H ( )", "VARPB55A ( )",
"VARPB55B ( )", "VARPB55C ( )", "VARPB55D ( )", "VARPB55F ( )",
"VARPB55G ( )", "VARPB55H ( )", "VARPB56A ( )", "VARPB56B ( )",
"VARPB56C ( )", "VARPB56D ( )", "VARPB56E ( )", "VARPB56F ( )",
"VARPB56G ( )", "VARPB56H ( )", "VARPB57A ( )", "VARPB57B ( )",
"VARPB57C ( )", "VARPB58A ( )", "VARPB58B ( )", "VARPB58C ( )",
"VARPB58D ( )", "VARPB58E ( )", "VARPB58F ( )", "VARPB58G ( )",
"VARPB58H ( )", "VARPB59A ( )", "VARPB59B ( )", "VARPB59C ( )",
"VARPB59D ( )", "VARPB59E ( )", "VARPB59F ( )", "VARPB59G ( )",
"VARPB59H ( )", "VARPB5A ( )", "VARPB5B ( )", "VARPB5C ( )",
"VARPB5D ( )", "VARPB5E ( )", "VARPB5F ( )", "VARPB5G ( )", "VARPB5H ( )",
"VARPB60A ( )", "VARPB60B ( )", "VARPB60C ( )", "VARPB6A ( )",
"VARPB6B ( )", "VARPB6C ( )", "VARPB6D ( )", "VARPB6E ( )", "VARPB6F ( )",
"VARPB6G ( )", "VARPB6H ( )", "VARPB7A ( )", "VARPB7B ( )", "VARPB7C ( )",
"VARPB7D ( )", "VARPB7E ( )", "VARPB7F ( )", "VARPB7G ( )", "VARPB7H ( )",
"VARPB8A ( )", "VARPB8B ( )", "VARPB8C ( )", "VARPB8D ( )", "VARPB8F ( )",
"VARPB8G ( )", "VARPB8H ( )", "VARPB9A ( )", "VARPB9B ( )", "VARPB9C ( )",
"VARPB9H ( )", "WatanabePf3D7_cultured", "WatanabePv", "WatanabePy17XL",
"XPB Sugano cDNA library (erythrocytic stage)", "XPF Sugano cDNA library (erythrocytic stage)",
"XPV Sugano cDNA library (erythrocytic stage)", "XPYs Sugano cDNA library (erythrocytic stage)",
"XPYw Sugano cDNA library (erythrocytic stage)", "Zhang/Gardner Pf 3D7 mixed asexual (Asexual stage)",
"cbsPfHB3.1; Debopam Chakrabarti", "czapPFDd2.1; Debopam Chakrabarti",
"ookinete library (12 h; 18h and 24 h after in vitro culture)",
"Nc 1314 Tachyzoite cDNA", "Nc-1 Tachyzoite cDNA Library", "Nc-1 Tachyzoite cDNA Library 2",
"Nc-1 pZ Tachyzoite cDNA Library", "Nc-1Tachyzoite cDNA", "Nc-LIV Tachyzoite cDNA Library",
"Neospora caninum", "Neospora caninum Lambda Zap cDNA library",
"RH tachyzoite cDNA library", "Tg CAST Tachyzoite cDNA Library",
"Tg CAST Tachyzoite cDNA Library 2", "Tg COUG Tachyzoite cDNA Library",
"TgMAS Tachyzoite cDNA Library", "TgME49 3 day invitro bradyzoite",
"TgME49 B7 Tachyzoite cDNA Library 1", "TgME49 B7 Tachyzoite cDNA Library 2",
"TgME49 Tachyzoite cDNA", "TgME49 invivo Bradyzoite cDNA (in vitro Bradyzoite; 6day)",
"TgME49 invivo Bradyzoite cDNA size selected", "TgME49cDNA (in vitro Bradyzoite; 6day)",
"TgRH Tachyzoite FL cDNA", "TgRH Tachyzoite Norm 1 cDNA Library",
"TgRH Tachyzoite Norm 5 cDNA Library", "TgRH Tachyzoite Norm 7 cDNA Library",
"TgRH Tachyzoite Subtracted cDNA Library", "TgRH Tachyzoite cDNA",
"TgRH*-Tachyzoite cDNA", "TgRHcDNA", "TgVEG Fully sporulated oocyst cDNA (Fully sporulated oocysts)",
"TgVEG Partially sporulated oocyst cDNA (Partially sporulated oocysts)",
"TgVEG-Tachyzoite cDNA", "TgVEG118 Tachyzoite cDNA Library",
"TgVEG118 Tachyzoite cDNA Library-2", "TgZAP-cDNA1 (tachyzoite)",
"Toxoplasma gondii", "Toxoplasma gondii Bradyzoite Library (Bradyzoite developmental stage)",
"Toxoplasma gondii Tachyzoite Library (Tachyzoite developmental stage)",
"Toxoplasma gondii encystation; subtracted cDNA", "Toxoplasma gondii mRNA (T.Koyama)",
"WatanabeTgRH (tachyzoites)", "differentially expressed gene in tachyzoite stage of Neospora caninum Korea isolate Nc-Kr2 (Tachy...",
"Cold-induced pseudocyst (TvCS) (Pseudocyst stage)", "Cot1000 normalized T1 cDNA library",
"Cot6 normalized T1 cDNA library", "Fibronectin-mediated cytoadherence (TvFN) (Amoeboid stage)",
"G2/M trophozoite (TvG2M) (G1/S phase)", "HMW C1 cDNA library",
"Low glucose culture (TvLG)", "Low iron culture (TvLI)", "Normal unsynchronized culture (TvEST) (Unsynchronized culture)",
"Trichomonas vaginalis", "VEC-mediated cytoadherence (TvVEC) (Amoeboid stage)",
"non-normalized T1 cDNA library", "Bloodstream form of serodeme ILTat1.1",
"Differentially expressed Trypanosoma brucei mRNAs", "Leishmania braziliensis",
"Leishmania braziliensis amastigote stage; 72 hours post infection",
"Leishmania braziliensis procyclic stage; logarithmic growth phase",
"Leishmania infantum", "Leishmania major", "Leishmania major Amastigote Lambda Zap II library",
"Leishmania major Amastigote full length cDNA library", "Leishmania major promastigote full length cDNA library from early logarithmic stage (day 3)",
"Leishmania major promastigote full length cDNA library from logarithmic stage (day 7)",
"Leishmania major promastigote full length cDNA library from stationary stage (day 10)",
"Leishmania mexicana", "LmLV39cDNA", "MVAT4 bloodstream form of serodeme WRATat1.1",
"Random insertions of transposon MosHYG in Leishmania major (promastigote)",
"SM-Lib-Tc Tehuantepec 17LER", "SM-Lib-Tc Tehuantepec 17WTS",
"SM-Lib-Tc Y BZR", "Stage-specific mRNA", "T. Cruzi epimastigote normalised cDNA Library",
"T. cruzi epimastigote normalised cDNA Library", "T. cruzi epimastigote normalized cDNA Library",
"T.cruzi epimastigote non-normalized cDNA Library", "T.cruzi epimastigote normalized cDNA Library",
"TcAM (amastigote-like)", "TcT-E (trypomastigote)", "TcTR (trypomastigote)",
"Trypanosoma brucei", "Trypanosoma brucei rhodesiense ZAP II library (Insect form)",
"Trypanosoma brucei strain 927 ESTs", "Trypanosoma congolense",
"Trypanosoma congolense isolate IL300 bloodstream stage", "Trypanosoma congolense isolate IL300 epimastigote stage",
"Trypanosoma congolense isolate IL300 metacyclic stage", "Trypanosoma congolense isolate IL300 normalised bloodstream stage",
"Trypanosoma congolense isolate IL300 normalised metacyclic stage",
"Trypanosoma congolense isolate IL300 procyclic stage", "Trypanosoma cruzi",
"Trypanosoma cruzi CL Brener epimastigote", "Trypanosoma cruzi Y (Tomoo Tanaka)",
"Trypanosoma cruzi amastigote cDNA library", "Trypanosoma cruzi differential display cDNA library",
"page (promastigote)", "sucrose-gradient-F23 (promastigote)",
"sucrose-gradient-F25 (promastigote)")
EstsWithGeneOverlap =
function(
`libraryIdGenes` = 'Entamoeba dispar,Entamoeba histolytica trophozoite,E. histolytica Normalized cDNA library,Entamoeba cDNA clone 6 (trophozoite),Entamoeba histolytica HM-1:IMSS,Entamoeba cDNA to mRNA (trophozoite),Entamoeba histolytica YS-27,Entamoeba histolytica,Entamoeba dispar cDNAs (trophozoite),Entamoeba histolytica HM-1:IMSS mRNA (Tomoo Tanaka) (trophozoite),WatanabeCpHNJ-1 (oocyst),Cryptosporidium muris,XCP Sugano cDNA library (sporozoite stage),uniZAPCpIOWAsporoLib3 (sporozoite),Cryptosporidium muris (strain RN66) cDNA library; stage oocyst,pSKIIminusCpIOWAsporoLib2 (sporozoite),C. parvum KSU-1 normalized sporozoite,Pooled Cryptosporidium parvum KSU-1 enriched 24-48hr post-infection; in-vitro non-normalized nano...,Cryptosporidium parvum,uniZAPCpIOWAsporoLib1 (sporozoite),Giardia lamblia trophozoite (Trophozoite),Giardia Assemblage A isolate WB,trophozoite cDNA,Encephalitozoon cuniculi,RACE-PCR products from Encephalitozoon cuniculi (Dormant spores),Laboratory isolate 3D7AH1 Pf Trophozoite stage var gene cDNA,VARPB11A ( ),VARPB13G ( ),VARPB18H ( ),VARPB19D ( ),VARPB27A ( ),Ugandan isolate UKS2 Pf var gene cDNA (Trophozoite),VARPB15E ( ),VARPB27B ( ),VARPB56F ( ),VARPB53G ( ),VARPB59D ( ),Laboratory isolate 7G8 Pf Ring stage var gene cDNA,VARPB19H ( ),Laboratory isolate FCR3s1.6 Pf Ring stage var gene cDNA,SSH library of Plasmodium berghei strain RQ (erythrocytic stage),VARPB56C ( ),Ugandan isolate UAS40 Pf var gene cDNA (Trophozoite),VARPB42F ( ),VARPB14A ( ),VARPB1D ( ),VARPB23F ( ),Ugandan isolate UAS22 Pf var gene cDNA (Trophozoite),VARPB16G ( ),VARPB3G ( ),VARPB57B ( ),VARPB32C ( ),VARPB18A ( ),VARPB4F ( ),VARPB54C ( ),Ugandan isolate UAM50 Pf var gene cDNA (Trophozoite),VARPB59A ( ),Blood stage Plasmodium falciparum cDNA library PFExtensions,VARPB34F ( ),VARPB26E ( ),VARPB5F ( ),Ugandan isolate UAS24 Pf var gene cDNA (Trophozoite),VARPB29B ( ),VARPB50G ( ),Laboratory isolate FCR3 Pf Trophozoite stage var gene cDNA,Ugandan isolate UAS06 Pf var gene cDNA (Trophozoite),VARPB55D ( ),In vitro adapted parasite UAS31b Pf Trophozoite stage var gene cDNA,Ugandan isolate UAM16 Pf var gene cDNA (Trophozoite),VARPB1H ( ),VARPB28A ( ),VARPB40H ( ),Ugandan isolate UKM64 Pf Ring stage var gene cDNA,VARPB9A ( ),Plasmodium berghei NK65 salivary gland sporozoite,WatanabePv,VARPB51A ( ),Laboratory isolate DD2 Pf Trophozoite stage var gene cDNA,Plasmodium berghei ookinete stage,VARPB22E ( ),VARPB8D ( ),XPF Sugano cDNA library (erythrocytic stage),VARPB59C ( ),Ugandan isolate UKS4 Pf var gene cDNA (Trophozoite),VARPB3C ( ),VARPB42D ( ),Ugandan isolate UKS47 Pf Ring stage var gene cDNA,VARPB27E ( ),VARPB51F ( ),VARPB21G ( ),Blood stage Plasmodium falciparum cDNA library PfSuOrig,Ugandan isolate UAM32 Pf var gene cDNA (Trophozoite),VARPB31G ( ),VARPB3D ( ),Ugandan isolate UAM25 Pf var gene cDNA (Trophozoite),VARPB58C ( ),VARPB31A ( ),VARPB51H ( ),VARPB6F ( ),VARPB28G ( ),VARPB60B ( ),Blood stage Plasmodium falciparum cDNA library PfBamH1,Laboratory isolate FCR3 Pf Ring stage var gene cDNA,Plasmodium yoelli 17X axenic hepatic stages,Ugandan isolate UAS36 Pf var gene cDNA (Trophozoite),Laboratory isolate 3D7AH1S.2 Pf Trophozoite stage var gene cDNA,Ugandan isolate UAS21 Pf var gene cDNA (Trophozoite),VARPB16A ( ),VARPB23G ( ),Ugandan isolate UAM27 Pf var gene cDNA (Trophozoite),VARPB26G ( ),VARPB29G ( ),Ugandan isolate UAS47 Pf var gene cDNA (Trophozoite),VARPB48B ( ),VARPB55F ( ),XPB Sugano cDNA library (erythrocytic stage),Ugandan isolate UAM39 Pf var gene cDNA (Trophozoite),VARPB48H ( ),Plasmodium falciparum,VARPB35H ( ),VARPB40E ( ),Ugandan isolate UKS12 Pf var gene cDNA (Trophozoite),Ugandan isolate UKM19 Pf Ring stage var gene cDNA,VARPB29C ( ),VARPB29H ( ),VARPB13C ( ),VARPB17D ( ),VARPB24A ( ),VARPB3F ( ),VARPB56H ( ),VARPB17A ( ),VARPB40F ( ),Ugandan isolate UAM49 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS41 Pf var gene cDNA (Trophozoite),VARPB36H ( ),VARPB43H ( ),Ugandan isolate UAS13 Pf var gene cDNA (Trophozoite),Plasmodium berghei liver stage parasite,VARPB58B ( ),Plasmodium berghei,Ugandan isolate UAS12 Pf var gene cDNA (Trophozoite),Ugandan isolate UKM64 Pf Trophozoite stage var gene cDNA,VARPB47G ( ),VARPB26B ( ),In vitro adapted parasite UAS22b Pf Trophozoite stage var gene cDNA,VARPB53C ( ),VARPB32F ( ),VARPB43D ( ),VARPB5B ( ),VARPB25E ( ),VARPB56B ( ),PvBEcDNA (Assexual Blood Stages),Ugandan isolate UAM46 Pf var gene cDNA (Trophozoite),VARPB25B ( ),VARPB57C ( ),VARPB59B ( ),VARPB6A ( ),Laboratory isolate TM284 Pf Trophozoite stage var gene cDNA,Plasmodium falciparum 3D7 asexual cDNA,VARPB24E ( ),Ugandan isolate UAM08 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS39 Pf var gene cDNA (Trophozoite),VARPB1C ( ),VARPB39E ( ),Ugandan isolate UAM47 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM09 Pf var gene cDNA (Trophozoite),VARPB5A ( ),VARPB57A ( ),Ugandan isolate UAM34 Pf var gene cDNA (Trophozoite),VARPB20F ( ),VARPB50F ( ),Plasmodium berghei cDNA library,Ugandan isolate UKS14 Pf Ring stage var gene cDNA,VARPB13H ( ),VARPB4E ( ),VARPB54E ( ),Ugandan isolate UKM19 Pf Trophozoite stage var gene cDNA,VARPB48C ( ),VARPB20D ( ),VARPB3B ( ),VARPB31F ( ),In vitro adapted parasite UAM52b Pf Trophozoite stage var gene cDNA,VARPB48D ( ),VARPB59E ( ),VARPB39B ( ),VARPB39H ( ),VARPB43E ( ),Plasmodium yoelii yoelii from Anopheles stephensi midgut (oocyst),Sugano Malaria cDNA library (erythrocytic stage),Ugandan isolate UAS08 Pf var gene cDNA (Trophozoite),VARPB27F ( ),VARPB55H ( ),VARPB6E ( ),Ugandan isolate UAM12 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM20 Pf var gene cDNA (Trophozoite),VARPB21E ( ),Ugandan isolate UAS20 Pf var gene cDNA (Trophozoite),VARPB7C ( ),Pb cDNA #17; Tommaso Pace; Marta Ponzi; and Clara Frontali (asynchronous blood stage),VARPB53H ( ),Ugandan isolate UAM53 Pf var gene cDNA (Trophozoite),WatanabePy17XL,VARPB54A ( ),XPV Sugano cDNA library (erythrocytic stage),In vitro adapted parasite UAS31b Pf Ring stage var gene cDNA,Ugandan isolate UKS7 Pf Trophozoite stage var gene cDNA,VARPB30A ( ),VARPB51G ( ),In vitro adapted parasite UAS41b Pf Trophozoite stage var gene cDNA,Ugandan isolate UAM23 Pf var gene cDNA (Trophozoite),VARPB25G ( ),VARPB25A ( ),VARPB54D ( ),Laboratory isolate FCR3s1.6 Pf Trophozoite stage var gene cDNA,VARPB41F ( ),VARPB5G ( ),czapPFDd2.1; Debopam Chakrabarti,VARPB22F ( ),VARPB8A ( ),Ugandan isolate UAM17 Pf var gene cDNA (Trophozoite),VARPB49H ( ),ookinete library (12 h; 18h and 24 h after in vitro culture),In vitro adapted parasite UAS29b Pf Ring stage var gene cDNA,VARPB2F ( ),Ugandan isolate UAS19 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM36 Pf var gene cDNA (Trophozoite),VARPB23E ( ),VARPB28B ( ),Plasmodium berghei ookinete,Ugandan isolate UAS29 Pf var gene cDNA (Trophozoite),VARPB58A ( ),VARPB58G ( ),VARPB21B ( ),VARPB4G ( ),Ugandan isolate UAS25 Pf var gene cDNA (Trophozoite),VARPB28F ( ),VARPB56D ( ),Ugandan isolate UAM31 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM41 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS5 Pf Ring stage var gene cDNA,VARPB28E ( ),VARPB49F ( ),Ugandan isolate UAM45 Pf var gene cDNA (Trophozoite),VARPB34H ( ),VARPB50E ( ),In vitro adapted parasite UAS22b Pf Ring stage var gene cDNA,Ugandan isolate UAS26 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM40 Pf var gene cDNA (Trophozoite),Plasmodium yoelii sporozoite cDNA (sporozoites from salivary gland),VARPB13D ( ),VARPB1F ( ),VARPB21A ( ),Ugandan isolate UKS9 Pf var gene cDNA (Trophozoite),VARPB40D ( ),Pb cDNA #20; Charles Yowell and Jane Carlton (asynchronous blood stage),Ugandan isolate UAS23 Pf var gene cDNA (Trophozoite),VARPB34A ( ),VARPB53D ( ),Plasmodium yoelii liver stage LCM cDNA library (40 hour liver schizont),Ugandan isolate UKS15 Pf Ring stage var gene cDNA,Plasmodium berghei strain ANKA erythrocytic stage,Ugandan isolate UKS15 Pf var gene cDNA (Trophozoite),VARPB5H ( ),Ugandan isolate UAM37 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM52 Pf var gene cDNA (Trophozoite),VARPB18C ( ),VARPB34E ( ),VARPB15A ( ),Ugandan isolate UAM51 Pf var gene cDNA (Trophozoite),VARPB7D ( ),VARPB23B ( ),VARPB55B ( ),VARPB29F ( ),Plasmodium falciparum NF54 (D.A.Fidock) (asynchronous asexual blood stage),Ugandan isolate UKS7 Pf var gene cDNA (Trophozoite),VARPB54F ( ),In vitro adapted parasite UAM52b Pf Ring stage var gene cDNA,Laboratory isolate TM284 Pf Ring stage var gene cDNA,Ugandan isolate UAS11 Pf var gene cDNA (Trophozoite),Plasmodium falciparum FCB1 schizont,Ugandan isolate UAM35 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS27 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS38 Pf var gene cDNA (Trophozoite),VARPB26H ( ),Laboratory isolate DD2 Pf Ring stage var gene cDNA,VARPB22H ( ),VARPB31B ( ),VARPB35G ( ),VARPB42H ( ),VARPB53F ( ),Ugandan isolate UAM43 Pf var gene cDNA (Trophozoite),VARPB4H ( ),Plasmodium vivax,VARPB43G ( ),In vitro adapted parasite UAS41b Pf Ring stage var gene cDNA,PyBS (Asexual blood stages),Ugandan isolate UAM15 Pf var gene cDNA (Trophozoite),VARPB2D ( ),Plasmodium berghei midgut sporozoite,Plasmodium falciparum cDNA pUC8 Express Library (late erythrocytic-stage parasite mRNA),VARPB18F ( ),VARPB17G ( ),VARPB50H ( ),Plasmodium berghei erythrocytic schizont,Plasmodium berghei salivary grand sporozoite (salivary gland sporozoite),Plasmodium falciparum FcB1 schizont,VARPB3A ( ),VARPB48G ( ),VARPB55G ( ),VARPB40G ( ),VARPB42C ( ),Ugandan isolate UAM14 Pf var gene cDNA (Trophozoite),VARPB7G ( ),VARPB8C ( ),VARPB55C ( ),VARPB7A ( ),VARPB9C ( ),Blood stage Plasmodium falciparum cDNA library PfSau3a,Ugandan isolate UAM29 Pf var gene cDNA (Trophozoite),VARPB21H ( ),VARPB6D ( ),VARPB7F ( ),VARPB9B ( ),Ugandan isolate UAM28 Pf var gene cDNA (Trophozoite),VARPB14D ( ),VARPB23H ( ),Ugandan isolate UAS31 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS1 Pf var gene cDNA (Trophozoite),VARPB13A ( ),Ugandan isolate UAS17 Pf var gene cDNA (Trophozoite),VARPB6G ( ),Field isolate cDNA library,Ugandan isolate UAS16 Pf var gene cDNA (Trophozoite),VARPB58D ( ),VARPB8H ( ),VARPB4A ( ),VARPB24D ( ),VARPB36D ( ),VARPB3H ( ),VARPB53A ( ),VARPB6H ( ),VARPB54B ( ),VARPB19B ( ),VARPB29E ( ),VARPB54G ( ),VARPB7H ( ),VARPB22C ( ),VARPB48E ( ),VARPB54H ( ),VARPB7B ( ),GenoScope Schizont enriched,Ugandan isolate UKS14 Pf Trophozoite stage var gene cDNA,VARPB7E ( ),VARPB8B ( ),Ugandan isolate UKS3 Pf Ring stage var gene cDNA,VARPB8F ( ),VARPB60A ( ),Ugandan isolate UAM05 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS10 Pf var gene cDNA (Trophozoite),VARPB14C ( ),Ugandan isolate UAS10 Pf var gene cDNA (Trophozoite),VARPB42G ( ),VARPB35D ( ),Ugandan isolate UAS33 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS37 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS48 Pf var gene cDNA (Trophozoite),VARPB9H ( ),Ugandan isolate UKS17 Pf var gene cDNA (Trophozoite),VARPB22A ( ),VARPB4C ( ),VARPB5D ( ),VARPB22D ( ),VARPB2E ( ),VARPB35F ( ),VARPB47F ( ),VARPB53E ( ),VARPB2A ( ),cbsPfHB3.1; Debopam Chakrabarti,Ugandan isolate UAM33 Pf var gene cDNA (Trophozoite),VARPB20G ( ),VARPB3E ( ),Ugandan isolate UAS14 Pf var gene cDNA (Trophozoite),VARPB25C ( ),VARPB42B ( ),VARPB25F ( ),Ugandan isolate UAM48 Pf var gene cDNA (Trophozoite),VARPB22B ( ),WatanabePf3D7_cultured,XPYs Sugano cDNA library (erythrocytic stage),VARPB4D ( ),Ugandan isolate UAM13 Pf var gene cDNA (Trophozoite),VARPB11B ( ),VARPB1G ( ),VARPB56G ( ),Ugandan isolate UAS28 Pf var gene cDNA (Trophozoite),VARPB24G ( ),VARPB39G ( ),VARPB29A ( ),VARPB14B ( ),VARPB5E ( ),Ugandan isolate UAM38 Pf var gene cDNA (Trophozoite),VARPB43F ( ),VARPB58E ( ),Ugandan isolate UAS43 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM21 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS25 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS3 Pf var gene cDNA (Trophozoite),VARPB39C ( ),VARPB48A ( ),Ugandan isolate UAS07 Pf var gene cDNA (Trophozoite),VARPB24B ( ),VARPB59F ( ),VARPB27H ( ),VARPB31D ( ),VARPB47E ( ),VARPB6B ( ),Ugandan isolate UKS14 Pf var gene cDNA (Trophozoite),VARPB53B ( ),VARPB43C ( ),XPYw Sugano cDNA library (erythrocytic stage),Laboratory isolate 7G8 Pf Trophozoite stage var gene cDNA,VARPB1E ( ),Plasmodium yoelii,VARPB23D ( ),VARPB55A ( ),VARPB8G ( ),VARPB36C ( ),VARPB56A ( ),VARPB58F ( ),Ugandan isolate UAM26 Pf var gene cDNA (Trophozoite),VARPB27G ( ),VARPB15C ( ),Plasmodium falciparum 3D7 gametocyte cDNA library (gametocyte (stage III-V)),Ugandan isolate UKS25 Pf Ring stage var gene cDNA,VARPB31H ( ),Laboratory isolate 3D7AH1 Pf Ring stage var gene cDNA,Ugandan isolate UAS03 Pf var gene cDNA (Trophozoite),VARPB26F ( ),Ugandan isolate UAS32 Pf var gene cDNA (Trophozoite),VARPB27C ( ),VARPB26D ( ),VARPB43B ( ),Ugandan isolate UAM18 Pf var gene cDNA (Trophozoite),VARPB4B ( ),Pb sgSpz/ooSpz subtraction library,Ugandan isolate UAS34 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS5 Pf var gene cDNA (Trophozoite),VARPB24C ( ),VARPB6C ( ),VARPB56E ( ),Laboratory isolate 3D7AH1S.2 Pf Ring stage var gene cDNA,Ugandan isolate UKS7 Pf Ring stage var gene cDNA,VARPB59H ( ),SSH library of Plasmodium berghei strain K173 (erythrocytic stage),VARPB20B ( ),Ugandan isolate UAM44 Pf var gene cDNA (Trophozoite),VARPB27D ( ),VARPB40A ( ),VARPB5C ( ),VARPB60C ( ),Ugandan isolate UAS45 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS18 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS13 Pf var gene cDNA (Trophozoite),VARPB22G ( ),VARPB28C ( ),VARPB59G ( ),In vitro adapted parasite UAS29b Pf Trophozoite stage var gene cDNA,Ugandan isolate UAM11 Pf var gene cDNA (Trophozoite),VARPB51B ( ),VARPB58H ( ),Ugandan isolate UAS46 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM22 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS44 Pf var gene cDNA (Trophozoite),Zhang/Gardner Pf 3D7 mixed asexual (Asexual stage),Ugandan isolate UKS47 Pf Trophozoite stage var gene cDNA,VARPB39D ( ),Ugandan isolate UAM42 Pf var gene cDNA (Trophozoite),VARPB24H ( ),Nc-1 pZ Tachyzoite cDNA Library,TgME49cDNA (in vitro Bradyzoite; 6day),Toxoplasma gondii encystation; subtracted cDNA,TgZAP-cDNA1 (tachyzoite),Tg COUG Tachyzoite cDNA Library,Nc 1314 Tachyzoite cDNA,Toxoplasma gondii,TgRH Tachyzoite cDNA,TgRH Tachyzoite Norm 5 cDNA Library,TgRH Tachyzoite FL cDNA,TgVEG Fully sporulated oocyst cDNA (Fully sporulated oocysts),TgRH*-Tachyzoite cDNA,TgVEG118 Tachyzoite cDNA Library,TgME49 invivo Bradyzoite cDNA (in vitro Bradyzoite; 6day),Nc-1 Tachyzoite cDNA Library,Neospora caninum,TgME49 invivo Bradyzoite cDNA size selected,Nc-1 Tachyzoite cDNA Library 2,differentially expressed gene in tachyzoite stage of Neospora caninum Korea isolate Nc-Kr2 (Tachy...,TgRH Tachyzoite Norm 7 cDNA Library,Toxoplasma gondii mRNA (T.Koyama),TgVEG Partially sporulated oocyst cDNA (Partially sporulated oocysts),Neospora caninum Lambda Zap cDNA library,Toxoplasma gondii Tachyzoite Library (Tachyzoite developmental stage),Tg CAST Tachyzoite cDNA Library 2,WatanabeTgRH (tachyzoites),TgRHcDNA,TgVEG118 Tachyzoite cDNA Library-2,TgRH Tachyzoite Subtracted cDNA Library,TgMAS Tachyzoite cDNA Library,Nc-LIV Tachyzoite cDNA Library,Toxoplasma gondii Bradyzoite Library (Bradyzoite developmental stage),Tg CAST Tachyzoite cDNA Library,RH tachyzoite cDNA library,TgME49 3 day invitro bradyzoite,TgVEG-Tachyzoite cDNA,TgME49 B7 Tachyzoite cDNA Library 1,TgRH Tachyzoite Norm 1 cDNA Library,Nc-1Tachyzoite cDNA,TgME49 Tachyzoite cDNA,TgME49 B7 Tachyzoite cDNA Library 2,Low iron culture (TvLI),non-normalized T1 cDNA library,Cot6 normalized T1 cDNA library,Cot1000 normalized T1 cDNA library,HMW C1 cDNA library,Low glucose culture (TvLG),Normal unsynchronized culture (TvEST) (Unsynchronized culture),VEC-mediated cytoadherence (TvVEC) (Amoeboid stage),Fibronectin-mediated cytoadherence (TvFN) (Amoeboid stage),G2/M trophozoite (TvG2M) (G1/S phase),Trichomonas vaginalis,Cold-induced pseudocyst (TvCS) (Pseudocyst stage),Leishmania major Amastigote full length cDNA library,Stage-specific mRNA,Trypanosoma congolense,Trypanosoma brucei rhodesiense ZAP II library (Insect form),Leishmania major,Leishmania mexicana,Trypanosoma congolense isolate IL300 normalised bloodstream stage,Leishmania major Amastigote Lambda Zap II library,Trypanosoma cruzi Y (Tomoo Tanaka),Leishmania braziliensis,Trypanosoma brucei strain 927 ESTs,sucrose-gradient-F23 (promastigote),Leishmania braziliensis procyclic stage; logarithmic growth phase,Trypanosoma cruzi amastigote cDNA library,LmLV39cDNA,Trypanosoma cruzi,Differentially expressed Trypanosoma brucei mRNAs,T. cruzi epimastigote normalized cDNA Library,TcTR (trypomastigote),Bloodstream form of serodeme ILTat1.1,Trypanosoma congolense isolate IL300 metacyclic stage,T. Cruzi epimastigote normalised cDNA Library,SM-Lib-Tc Tehuantepec 17WTS,page (promastigote),Random insertions of transposon MosHYG in Leishmania major (promastigote),Trypanosoma congolense isolate IL300 bloodstream stage,TcT-E (trypomastigote),sucrose-gradient-F25 (promastigote),Leishmania major promastigote full length cDNA library from stationary stage (day 10),Trypanosoma congolense isolate IL300 epimastigote stage,T.cruzi epimastigote normalized cDNA Library,MVAT4 bloodstream form of serodeme WRATat1.1,T. cruzi epimastigote normalised cDNA Library,SM-Lib-Tc Y BZR,Trypanosoma brucei,SM-Lib-Tc Tehuantepec 17LER,Leishmania major promastigote full length cDNA library from early logarithmic stage (day 3),Leishmania major promastigote full length cDNA library from logarithmic stage (day 7),Trypanosoma cruzi differential display cDNA library,T.cruzi epimastigote non-normalized cDNA Library,Trypanosoma congolense isolate IL300 procyclic stage,Trypanosoma cruzi CL Brener epimastigote,Leishmania infantum,Leishmania braziliensis amastigote stage; 72 hours post infection,Trypanosoma congolense isolate IL300 normalised metacyclic stage,TcAM (amastigote-like)', `bp_overlap_gte` = '100', `overlapOrNot` = 'does overlap with a gene', `o-fields` = 'NULL', `o-tables` = 'NULL', ..., .url = if(.json) 'http://eupathdb.org/eupathdb/webservices/EstQuestions/EstsWithGeneOverlap.json' else 'http://eupathdb.org/eupathdb/webservices/EstQuestions/EstsWithGeneOverlap.xml', .convert = NULL, .json = TRUE
)
{
`libraryIdGenes` <- checkValues(`libraryIdGenes`, "`EstsWithGeneOverlap.libraryIdGenes.options`", 'libraryIdGenes', TRUE)
`overlapOrNot` <- checkValues(`overlapOrNot`, c("does overlap with a gene", "does not overlap with a gene"), 'overlapOrNot', FALSE)
if(!missing(`o-fields`)) `o-fields` <- checkValues(`o-fields`, c("all", "none", "primary_key", "organism", "length", "dbest_name",
"assembly_source_id", "vector", "stage", "organism_text", "ncbi_tax_id",
"sequence", "wdk_weight"), 'o-fields', TRUE)
if(!missing(`o-tables`)) `o-tables` <- checkValues(`o-tables`, c("all", "none"), 'o-tables', TRUE)
params = list(
'libraryIdGenes' = `libraryIdGenes`,
'bp_overlap_gte' = `bp_overlap_gte`,
'overlapOrNot' = `overlapOrNot`
)
if(!missing(`o-fields`))
params[['o-fields']] = `o-fields`
if(!missing(`o-tables`))
params[['o-tables']] = `o-tables`
ans = getForm(.url, .params = params, ...)
if(is.null(.convert) && .json) return(fromJSON(ans))
if(!is.null(.convert))
.convert(ans)
else if(!is.null(type <- attr(ans, 'Content-Type')) && type == 'text/json')
convertJSON(ans)
else
ans
}
`EstsWithGeneOverlap.libraryIdGenes.options` =
c("Entamoeba dispar", "Entamoeba histolytica trophozoite", "E. histolytica Normalized cDNA library",
"Entamoeba cDNA clone 6 (trophozoite)", "Entamoeba histolytica HM-1:IMSS",
"Entamoeba cDNA to mRNA (trophozoite)", "Entamoeba histolytica YS-27",
"Entamoeba histolytica", "Entamoeba dispar cDNAs (trophozoite)",
"Entamoeba histolytica HM-1:IMSS mRNA (Tomoo Tanaka) (trophozoite)",
"WatanabeCpHNJ-1 (oocyst)", "Cryptosporidium muris", "XCP Sugano cDNA library (sporozoite stage)",
"uniZAPCpIOWAsporoLib3 (sporozoite)", "Cryptosporidium muris (strain RN66) cDNA library; stage oocyst",
"pSKIIminusCpIOWAsporoLib2 (sporozoite)", "C. parvum KSU-1 normalized sporozoite",
"Pooled Cryptosporidium parvum KSU-1 enriched 24-48hr post-infection; in-vitro non-normalized nano...",
"Cryptosporidium parvum", "uniZAPCpIOWAsporoLib1 (sporozoite)",
"Giardia lamblia trophozoite (Trophozoite)", "Giardia Assemblage A isolate WB",
"trophozoite cDNA", "Encephalitozoon cuniculi", "RACE-PCR products from Encephalitozoon cuniculi (Dormant spores)",
"Laboratory isolate 3D7AH1 Pf Trophozoite stage var gene cDNA",
"VARPB11A ( )", "VARPB13G ( )", "VARPB18H ( )", "VARPB19D ( )",
"VARPB27A ( )", "Ugandan isolate UKS2 Pf var gene cDNA (Trophozoite)",
"VARPB15E ( )", "VARPB27B ( )", "VARPB56F ( )", "VARPB53G ( )",
"VARPB59D ( )", "Laboratory isolate 7G8 Pf Ring stage var gene cDNA",
"VARPB19H ( )", "Laboratory isolate FCR3s1.6 Pf Ring stage var gene cDNA",
"SSH library of Plasmodium berghei strain RQ (erythrocytic stage)",
"VARPB56C ( )", "Ugandan isolate UAS40 Pf var gene cDNA (Trophozoite)",
"VARPB42F ( )", "VARPB14A ( )", "VARPB1D ( )", "VARPB23F ( )",
"Ugandan isolate UAS22 Pf var gene cDNA (Trophozoite)", "VARPB16G ( )",
"VARPB3G ( )", "VARPB57B ( )", "VARPB32C ( )", "VARPB18A ( )",
"VARPB4F ( )", "VARPB54C ( )", "Ugandan isolate UAM50 Pf var gene cDNA (Trophozoite)",
"VARPB59A ( )", "Blood stage Plasmodium falciparum cDNA library PFExtensions",
"VARPB34F ( )", "VARPB26E ( )", "VARPB5F ( )", "Ugandan isolate UAS24 Pf var gene cDNA (Trophozoite)",
"VARPB29B ( )", "VARPB50G ( )", "Laboratory isolate FCR3 Pf Trophozoite stage var gene cDNA",
"Ugandan isolate UAS06 Pf var gene cDNA (Trophozoite)", "VARPB55D ( )",
"In vitro adapted parasite UAS31b Pf Trophozoite stage var gene cDNA",
"Ugandan isolate UAM16 Pf var gene cDNA (Trophozoite)", "VARPB1H ( )",
"VARPB28A ( )", "VARPB40H ( )", "Ugandan isolate UKM64 Pf Ring stage var gene cDNA",
"VARPB9A ( )", "Plasmodium berghei NK65 salivary gland sporozoite",
"WatanabePv", "VARPB51A ( )", "Laboratory isolate DD2 Pf Trophozoite stage var gene cDNA",
"Plasmodium berghei ookinete stage", "VARPB22E ( )", "VARPB8D ( )",
"XPF Sugano cDNA library (erythrocytic stage)", "VARPB59C ( )",
"Ugandan isolate UKS4 Pf var gene cDNA (Trophozoite)", "VARPB3C ( )",
"VARPB42D ( )", "Ugandan isolate UKS47 Pf Ring stage var gene cDNA",
"VARPB27E ( )", "VARPB51F ( )", "VARPB21G ( )", "Blood stage Plasmodium falciparum cDNA library PfSuOrig",
"Ugandan isolate UAM32 Pf var gene cDNA (Trophozoite)", "VARPB31G ( )",
"VARPB3D ( )", "Ugandan isolate UAM25 Pf var gene cDNA (Trophozoite)",
"VARPB58C ( )", "VARPB31A ( )", "VARPB51H ( )", "VARPB6F ( )",
"VARPB28G ( )", "VARPB60B ( )", "Blood stage Plasmodium falciparum cDNA library PfBamH1",
"Laboratory isolate FCR3 Pf Ring stage var gene cDNA", "Plasmodium yoelli 17X axenic hepatic stages",
"Ugandan isolate UAS36 Pf var gene cDNA (Trophozoite)", "Laboratory isolate 3D7AH1S.2 Pf Trophozoite stage var gene cDNA",
"Ugandan isolate UAS21 Pf var gene cDNA (Trophozoite)", "VARPB16A ( )",
"VARPB23G ( )", "Ugandan isolate UAM27 Pf var gene cDNA (Trophozoite)",
"VARPB26G ( )", "VARPB29G ( )", "Ugandan isolate UAS47 Pf var gene cDNA (Trophozoite)",
"VARPB48B ( )", "VARPB55F ( )", "XPB Sugano cDNA library (erythrocytic stage)",
"Ugandan isolate UAM39 Pf var gene cDNA (Trophozoite)", "VARPB48H ( )",
"Plasmodium falciparum", "VARPB35H ( )", "VARPB40E ( )", "Ugandan isolate UKS12 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKM19 Pf Ring stage var gene cDNA", "VARPB29C ( )",
"VARPB29H ( )", "VARPB13C ( )", "VARPB17D ( )", "VARPB24A ( )",
"VARPB3F ( )", "VARPB56H ( )", "VARPB17A ( )", "VARPB40F ( )",
"Ugandan isolate UAM49 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS41 Pf var gene cDNA (Trophozoite)",
"VARPB36H ( )", "VARPB43H ( )", "Ugandan isolate UAS13 Pf var gene cDNA (Trophozoite)",
"Plasmodium berghei liver stage parasite", "VARPB58B ( )", "Plasmodium berghei",
"Ugandan isolate UAS12 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKM64 Pf Trophozoite stage var gene cDNA",
"VARPB47G ( )", "VARPB26B ( )", "In vitro adapted parasite UAS22b Pf Trophozoite stage var gene cDNA",
"VARPB53C ( )", "VARPB32F ( )", "VARPB43D ( )", "VARPB5B ( )",
"VARPB25E ( )", "VARPB56B ( )", "PvBEcDNA (Assexual Blood Stages)",
"Ugandan isolate UAM46 Pf var gene cDNA (Trophozoite)", "VARPB25B ( )",
"VARPB57C ( )", "VARPB59B ( )", "VARPB6A ( )", "Laboratory isolate TM284 Pf Trophozoite stage var gene cDNA",
"Plasmodium falciparum 3D7 asexual cDNA", "VARPB24E ( )", "Ugandan isolate UAM08 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS39 Pf var gene cDNA (Trophozoite)", "VARPB1C ( )",
"VARPB39E ( )", "Ugandan isolate UAM47 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM09 Pf var gene cDNA (Trophozoite)", "VARPB5A ( )",
"VARPB57A ( )", "Ugandan isolate UAM34 Pf var gene cDNA (Trophozoite)",
"VARPB20F ( )", "VARPB50F ( )", "Plasmodium berghei cDNA library",
"Ugandan isolate UKS14 Pf Ring stage var gene cDNA", "VARPB13H ( )",
"VARPB4E ( )", "VARPB54E ( )", "Ugandan isolate UKM19 Pf Trophozoite stage var gene cDNA",
"VARPB48C ( )", "VARPB20D ( )", "VARPB3B ( )", "VARPB31F ( )",
"In vitro adapted parasite UAM52b Pf Trophozoite stage var gene cDNA",
"VARPB48D ( )", "VARPB59E ( )", "VARPB39B ( )", "VARPB39H ( )",
"VARPB43E ( )", "Plasmodium yoelii yoelii from Anopheles stephensi midgut (oocyst)",
"Sugano Malaria cDNA library (erythrocytic stage)", "Ugandan isolate UAS08 Pf var gene cDNA (Trophozoite)",
"VARPB27F ( )", "VARPB55H ( )", "VARPB6E ( )", "Ugandan isolate UAM12 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM20 Pf var gene cDNA (Trophozoite)", "VARPB21E ( )",
"Ugandan isolate UAS20 Pf var gene cDNA (Trophozoite)", "VARPB7C ( )",
"Pb cDNA #17; Tommaso Pace; Marta Ponzi; and Clara Frontali (asynchronous blood stage)",
"VARPB53H ( )", "Ugandan isolate UAM53 Pf var gene cDNA (Trophozoite)",
"WatanabePy17XL", "VARPB54A ( )", "XPV Sugano cDNA library (erythrocytic stage)",
"In vitro adapted parasite UAS31b Pf Ring stage var gene cDNA",
"Ugandan isolate UKS7 Pf Trophozoite stage var gene cDNA", "VARPB30A ( )",
"VARPB51G ( )", "In vitro adapted parasite UAS41b Pf Trophozoite stage var gene cDNA",
"Ugandan isolate UAM23 Pf var gene cDNA (Trophozoite)", "VARPB25G ( )",
"VARPB25A ( )", "VARPB54D ( )", "Laboratory isolate FCR3s1.6 Pf Trophozoite stage var gene cDNA",
"VARPB41F ( )", "VARPB5G ( )", "czapPFDd2.1; Debopam Chakrabarti",
"VARPB22F ( )", "VARPB8A ( )", "Ugandan isolate UAM17 Pf var gene cDNA (Trophozoite)",
"VARPB49H ( )", "ookinete library (12 h; 18h and 24 h after in vitro culture)",
"In vitro adapted parasite UAS29b Pf Ring stage var gene cDNA",
"VARPB2F ( )", "Ugandan isolate UAS19 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM36 Pf var gene cDNA (Trophozoite)", "VARPB23E ( )",
"VARPB28B ( )", "Plasmodium berghei ookinete", "Ugandan isolate UAS29 Pf var gene cDNA (Trophozoite)",
"VARPB58A ( )", "VARPB58G ( )", "VARPB21B ( )", "VARPB4G ( )",
"Ugandan isolate UAS25 Pf var gene cDNA (Trophozoite)", "VARPB28F ( )",
"VARPB56D ( )", "Ugandan isolate UAM31 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM41 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKS5 Pf Ring stage var gene cDNA",
"VARPB28E ( )", "VARPB49F ( )", "Ugandan isolate UAM45 Pf var gene cDNA (Trophozoite)",
"VARPB34H ( )", "VARPB50E ( )", "In vitro adapted parasite UAS22b Pf Ring stage var gene cDNA",
"Ugandan isolate UAS26 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM40 Pf var gene cDNA (Trophozoite)",
"Plasmodium yoelii sporozoite cDNA (sporozoites from salivary gland)",
"VARPB13D ( )", "VARPB1F ( )", "VARPB21A ( )", "Ugandan isolate UKS9 Pf var gene cDNA (Trophozoite)",
"VARPB40D ( )", "Pb cDNA #20; Charles Yowell and Jane Carlton (asynchronous blood stage)",
"Ugandan isolate UAS23 Pf var gene cDNA (Trophozoite)", "VARPB34A ( )",
"VARPB53D ( )", "Plasmodium yoelii liver stage LCM cDNA library (40 hour liver schizont)",
"Ugandan isolate UKS15 Pf Ring stage var gene cDNA", "Plasmodium berghei strain ANKA erythrocytic stage",
"Ugandan isolate UKS15 Pf var gene cDNA (Trophozoite)", "VARPB5H ( )",
"Ugandan isolate UAM37 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM52 Pf var gene cDNA (Trophozoite)",
"VARPB18C ( )", "VARPB34E ( )", "VARPB15A ( )", "Ugandan isolate UAM51 Pf var gene cDNA (Trophozoite)",
"VARPB7D ( )", "VARPB23B ( )", "VARPB55B ( )", "VARPB29F ( )",
"Plasmodium falciparum NF54 (D.A.Fidock) (asynchronous asexual blood stage)",
"Ugandan isolate UKS7 Pf var gene cDNA (Trophozoite)", "VARPB54F ( )",
"In vitro adapted parasite UAM52b Pf Ring stage var gene cDNA",
"Laboratory isolate TM284 Pf Ring stage var gene cDNA", "Ugandan isolate UAS11 Pf var gene cDNA (Trophozoite)",
"Plasmodium falciparum FCB1 schizont", "Ugandan isolate UAM35 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS27 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS38 Pf var gene cDNA (Trophozoite)",
"VARPB26H ( )", "Laboratory isolate DD2 Pf Ring stage var gene cDNA",
"VARPB22H ( )", "VARPB31B ( )", "VARPB35G ( )", "VARPB42H ( )",
"VARPB53F ( )", "Ugandan isolate UAM43 Pf var gene cDNA (Trophozoite)",
"VARPB4H ( )", "Plasmodium vivax", "VARPB43G ( )", "In vitro adapted parasite UAS41b Pf Ring stage var gene cDNA",
"PyBS (Asexual blood stages)", "Ugandan isolate UAM15 Pf var gene cDNA (Trophozoite)",
"VARPB2D ( )", "Plasmodium berghei midgut sporozoite", "Plasmodium falciparum cDNA pUC8 Express Library (late erythrocytic-stage parasite mRNA)",
"VARPB18F ( )", "VARPB17G ( )", "VARPB50H ( )", "Plasmodium berghei erythrocytic schizont",
"Plasmodium berghei salivary grand sporozoite (salivary gland sporozoite)",
"Plasmodium falciparum FcB1 schizont", "VARPB3A ( )", "VARPB48G ( )",
"VARPB55G ( )", "VARPB40G ( )", "VARPB42C ( )", "Ugandan isolate UAM14 Pf var gene cDNA (Trophozoite)",
"VARPB7G ( )", "VARPB8C ( )", "VARPB55C ( )", "VARPB7A ( )",
"VARPB9C ( )", "Blood stage Plasmodium falciparum cDNA library PfSau3a",
"Ugandan isolate UAM29 Pf var gene cDNA (Trophozoite)", "VARPB21H ( )",
"VARPB6D ( )", "VARPB7F ( )", "VARPB9B ( )", "Ugandan isolate UAM28 Pf var gene cDNA (Trophozoite)",
"VARPB14D ( )", "VARPB23H ( )", "Ugandan isolate UAS31 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS1 Pf var gene cDNA (Trophozoite)", "VARPB13A ( )",
"Ugandan isolate UAS17 Pf var gene cDNA (Trophozoite)", "VARPB6G ( )",
"Field isolate cDNA library", "Ugandan isolate UAS16 Pf var gene cDNA (Trophozoite)",
"VARPB58D ( )", "VARPB8H ( )", "VARPB4A ( )", "VARPB24D ( )",
"VARPB36D ( )", "VARPB3H ( )", "VARPB53A ( )", "VARPB6H ( )",
"VARPB54B ( )", "VARPB19B ( )", "VARPB29E ( )", "VARPB54G ( )",
"VARPB7H ( )", "VARPB22C ( )", "VARPB48E ( )", "VARPB54H ( )",
"VARPB7B ( )", "GenoScope Schizont enriched", "Ugandan isolate UKS14 Pf Trophozoite stage var gene cDNA",
"VARPB7E ( )", "VARPB8B ( )", "Ugandan isolate UKS3 Pf Ring stage var gene cDNA",
"VARPB8F ( )", "VARPB60A ( )", "Ugandan isolate UAM05 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS10 Pf var gene cDNA (Trophozoite)", "VARPB14C ( )",
"Ugandan isolate UAS10 Pf var gene cDNA (Trophozoite)", "VARPB42G ( )",
"VARPB35D ( )", "Ugandan isolate UAS33 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS37 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS48 Pf var gene cDNA (Trophozoite)",
"VARPB9H ( )", "Ugandan isolate UKS17 Pf var gene cDNA (Trophozoite)",
"VARPB22A ( )", "VARPB4C ( )", "VARPB5D ( )", "VARPB22D ( )",
"VARPB2E ( )", "VARPB35F ( )", "VARPB47F ( )", "VARPB53E ( )",
"VARPB2A ( )", "cbsPfHB3.1; Debopam Chakrabarti", "Ugandan isolate UAM33 Pf var gene cDNA (Trophozoite)",
"VARPB20G ( )", "VARPB3E ( )", "Ugandan isolate UAS14 Pf var gene cDNA (Trophozoite)",
"VARPB25C ( )", "VARPB42B ( )", "VARPB25F ( )", "Ugandan isolate UAM48 Pf var gene cDNA (Trophozoite)",
"VARPB22B ( )", "WatanabePf3D7_cultured", "XPYs Sugano cDNA library (erythrocytic stage)",
"VARPB4D ( )", "Ugandan isolate UAM13 Pf var gene cDNA (Trophozoite)",
"VARPB11B ( )", "VARPB1G ( )", "VARPB56G ( )", "Ugandan isolate UAS28 Pf var gene cDNA (Trophozoite)",
"VARPB24G ( )", "VARPB39G ( )", "VARPB29A ( )", "VARPB14B ( )",
"VARPB5E ( )", "Ugandan isolate UAM38 Pf var gene cDNA (Trophozoite)",
"VARPB43F ( )", "VARPB58E ( )", "Ugandan isolate UAS43 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM21 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKS25 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS3 Pf var gene cDNA (Trophozoite)", "VARPB39C ( )",
"VARPB48A ( )", "Ugandan isolate UAS07 Pf var gene cDNA (Trophozoite)",
"VARPB24B ( )", "VARPB59F ( )", "VARPB27H ( )", "VARPB31D ( )",
"VARPB47E ( )", "VARPB6B ( )", "Ugandan isolate UKS14 Pf var gene cDNA (Trophozoite)",
"VARPB53B ( )", "VARPB43C ( )", "XPYw Sugano cDNA library (erythrocytic stage)",
"Laboratory isolate 7G8 Pf Trophozoite stage var gene cDNA",
"VARPB1E ( )", "Plasmodium yoelii", "VARPB23D ( )", "VARPB55A ( )",
"VARPB8G ( )", "VARPB36C ( )", "VARPB56A ( )", "VARPB58F ( )",
"Ugandan isolate UAM26 Pf var gene cDNA (Trophozoite)", "VARPB27G ( )",
"VARPB15C ( )", "Plasmodium falciparum 3D7 gametocyte cDNA library (gametocyte (stage III-V))",
"Ugandan isolate UKS25 Pf Ring stage var gene cDNA", "VARPB31H ( )",
"Laboratory isolate 3D7AH1 Pf Ring stage var gene cDNA", "Ugandan isolate UAS03 Pf var gene cDNA (Trophozoite)",
"VARPB26F ( )", "Ugandan isolate UAS32 Pf var gene cDNA (Trophozoite)",
"VARPB27C ( )", "VARPB26D ( )", "VARPB43B ( )", "Ugandan isolate UAM18 Pf var gene cDNA (Trophozoite)",
"VARPB4B ( )", "Pb sgSpz/ooSpz subtraction library", "Ugandan isolate UAS34 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS5 Pf var gene cDNA (Trophozoite)", "VARPB24C ( )",
"VARPB6C ( )", "VARPB56E ( )", "Laboratory isolate 3D7AH1S.2 Pf Ring stage var gene cDNA",
"Ugandan isolate UKS7 Pf Ring stage var gene cDNA", "VARPB59H ( )",
"SSH library of Plasmodium berghei strain K173 (erythrocytic stage)",
"VARPB20B ( )", "Ugandan isolate UAM44 Pf var gene cDNA (Trophozoite)",
"VARPB27D ( )", "VARPB40A ( )", "VARPB5C ( )", "VARPB60C ( )",
"Ugandan isolate UAS45 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS18 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS13 Pf var gene cDNA (Trophozoite)", "VARPB22G ( )",
"VARPB28C ( )", "VARPB59G ( )", "In vitro adapted parasite UAS29b Pf Trophozoite stage var gene cDNA",
"Ugandan isolate UAM11 Pf var gene cDNA (Trophozoite)", "VARPB51B ( )",
"VARPB58H ( )", "Ugandan isolate UAS46 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM22 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS44 Pf var gene cDNA (Trophozoite)",
"Zhang/Gardner Pf 3D7 mixed asexual (Asexual stage)", "Ugandan isolate UKS47 Pf Trophozoite stage var gene cDNA",
"VARPB39D ( )", "Ugandan isolate UAM42 Pf var gene cDNA (Trophozoite)",
"VARPB24H ( )", "Nc-1 pZ Tachyzoite cDNA Library", "TgME49cDNA (in vitro Bradyzoite; 6day)",
"Toxoplasma gondii encystation; subtracted cDNA", "TgZAP-cDNA1 (tachyzoite)",
"Tg COUG Tachyzoite cDNA Library", "Nc 1314 Tachyzoite cDNA",
"Toxoplasma gondii", "TgRH Tachyzoite cDNA", "TgRH Tachyzoite Norm 5 cDNA Library",
"TgRH Tachyzoite FL cDNA", "TgVEG Fully sporulated oocyst cDNA (Fully sporulated oocysts)",
"TgRH*-Tachyzoite cDNA", "TgVEG118 Tachyzoite cDNA Library",
"TgME49 invivo Bradyzoite cDNA (in vitro Bradyzoite; 6day)",
"Nc-1 Tachyzoite cDNA Library", "Neospora caninum", "TgME49 invivo Bradyzoite cDNA size selected",
"Nc-1 Tachyzoite cDNA Library 2", "differentially expressed gene in tachyzoite stage of Neospora caninum Korea isolate Nc-Kr2 (Tachy...",
"TgRH Tachyzoite Norm 7 cDNA Library", "Toxoplasma gondii mRNA (T.Koyama)",
"TgVEG Partially sporulated oocyst cDNA (Partially sporulated oocysts)",
"Neospora caninum Lambda Zap cDNA library", "Toxoplasma gondii Tachyzoite Library (Tachyzoite developmental stage)",
"Tg CAST Tachyzoite cDNA Library 2", "WatanabeTgRH (tachyzoites)",
"TgRHcDNA", "TgVEG118 Tachyzoite cDNA Library-2", "TgRH Tachyzoite Subtracted cDNA Library",
"TgMAS Tachyzoite cDNA Library", "Nc-LIV Tachyzoite cDNA Library",
"Toxoplasma gondii Bradyzoite Library (Bradyzoite developmental stage)",
"Tg CAST Tachyzoite cDNA Library", "RH tachyzoite cDNA library",
"TgME49 3 day invitro bradyzoite", "TgVEG-Tachyzoite cDNA", "TgME49 B7 Tachyzoite cDNA Library 1",
"TgRH Tachyzoite Norm 1 cDNA Library", "Nc-1Tachyzoite cDNA",
"TgME49 Tachyzoite cDNA", "TgME49 B7 Tachyzoite cDNA Library 2",
"Low iron culture (TvLI)", "non-normalized T1 cDNA library",
"Cot6 normalized T1 cDNA library", "Cot1000 normalized T1 cDNA library",
"HMW C1 cDNA library", "Low glucose culture (TvLG)", "Normal unsynchronized culture (TvEST) (Unsynchronized culture)",
"VEC-mediated cytoadherence (TvVEC) (Amoeboid stage)", "Fibronectin-mediated cytoadherence (TvFN) (Amoeboid stage)",
"G2/M trophozoite (TvG2M) (G1/S phase)", "Trichomonas vaginalis",
"Cold-induced pseudocyst (TvCS) (Pseudocyst stage)", "Leishmania major Amastigote full length cDNA library",
"Stage-specific mRNA", "Trypanosoma congolense", "Trypanosoma brucei rhodesiense ZAP II library (Insect form)",
"Leishmania major", "Leishmania mexicana", "Trypanosoma congolense isolate IL300 normalised bloodstream stage",
"Leishmania major Amastigote Lambda Zap II library", "Trypanosoma cruzi Y (Tomoo Tanaka)",
"Leishmania braziliensis", "Trypanosoma brucei strain 927 ESTs",
"sucrose-gradient-F23 (promastigote)", "Leishmania braziliensis procyclic stage; logarithmic growth phase",
"Trypanosoma cruzi amastigote cDNA library", "LmLV39cDNA", "Trypanosoma cruzi",
"Differentially expressed Trypanosoma brucei mRNAs", "T. cruzi epimastigote normalized cDNA Library",
"TcTR (trypomastigote)", "Bloodstream form of serodeme ILTat1.1",
"Trypanosoma congolense isolate IL300 metacyclic stage", "T. Cruzi epimastigote normalised cDNA Library",
"SM-Lib-Tc Tehuantepec 17WTS", "page (promastigote)", "Random insertions of transposon MosHYG in Leishmania major (promastigote)",
"Trypanosoma congolense isolate IL300 bloodstream stage", "TcT-E (trypomastigote)",
"sucrose-gradient-F25 (promastigote)", "Leishmania major promastigote full length cDNA library from stationary stage (day 10)",
"Trypanosoma congolense isolate IL300 epimastigote stage", "T.cruzi epimastigote normalized cDNA Library",
"MVAT4 bloodstream form of serodeme WRATat1.1", "T. cruzi epimastigote normalised cDNA Library",
"SM-Lib-Tc Y BZR", "Trypanosoma brucei", "SM-Lib-Tc Tehuantepec 17LER",
"Leishmania major promastigote full length cDNA library from early logarithmic stage (day 3)",
"Leishmania major promastigote full length cDNA library from logarithmic stage (day 7)",
"Trypanosoma cruzi differential display cDNA library", "T.cruzi epimastigote non-normalized cDNA Library",
"Trypanosoma congolense isolate IL300 procyclic stage", "Trypanosoma cruzi CL Brener epimastigote",
"Leishmania infantum", "Leishmania braziliensis amastigote stage; 72 hours post infection",
"Trypanosoma congolense isolate IL300 normalised metacyclic stage",
"TcAM (amastigote-like)")
duncantl/REuPathDB documentation built on May 15, 2019, 5:28 p.m.
R Package Documentation
Browse R Packages
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
EstBySourceId =
function(
`est_id` = 'AU087658,AA009308,EV500870,AA420947,CV202103', `signature`, `o-fields` = 'NULL', `o-tables` = 'NULL', ..., .url = if(.json) 'http://eupathdb.org/eupathdb/webservices/EstQuestions/EstBySourceId.json' else 'http://eupathdb.org/eupathdb/webservices/EstQuestions/EstBySourceId.xml', .convert = NULL, .json = TRUE
)
{
if(!missing(`o-fields`)) `o-fields` <- checkValues(`o-fields`, c("all", "none", "primary_key", "organism", "length", "dbest_name",
"assembly_source_id", "vector", "stage", "organism_text", "ncbi_tax_id",
"sequence", "wdk_weight"), 'o-fields', TRUE)
if(!missing(`o-tables`)) `o-tables` <- checkValues(`o-tables`, c("all", "none"), 'o-tables', TRUE)
params = list(
'est_id' = `est_id`,
'signature' = `signature`
)
if(!missing(`o-fields`))
params[['o-fields']] = `o-fields`
if(!missing(`o-tables`))
params[['o-tables']] = `o-tables`
ans = getForm(.url, .params = params, ...)
if(is.null(.convert) && .json) return(fromJSON(ans))
if(!is.null(.convert))
.convert(ans)
else if(!is.null(type <- attr(ans, 'Content-Type')) && type == 'text/json')
convertJSON(ans)
else
ans
}
ESTsByGeneIDs =
function(
`single_gene_id` = 'GL50803_10019', `bp_overlap_gte` = '100', `best_alignment_only` = 'Yes', `high_confidence_only` = 'No', `min_percent_identity` = '90', `min_percent_est_aligned` = '20', `o-fields` = 'NULL', `o-tables` = 'NULL', ..., .url = if(.json) 'http://eupathdb.org/eupathdb/webservices/EstQuestions/ESTsByGeneIDs.json' else 'http://eupathdb.org/eupathdb/webservices/EstQuestions/ESTsByGeneIDs.xml', .convert = NULL, .json = TRUE
)
{
`best_alignment_only` <- checkValues(`best_alignment_only`, c("Yes", "No"), 'best_alignment_only', FALSE)
`high_confidence_only` <- checkValues(`high_confidence_only`, c("No", "Yes"), 'high_confidence_only', FALSE)
if(!missing(`o-fields`)) `o-fields` <- checkValues(`o-fields`, c("all", "none", "primary_key", "organism", "length", "dbest_name",
"assembly_source_id", "vector", "stage", "organism_text", "ncbi_tax_id",
"sequence", "wdk_weight", "est_locations", "genes"), 'o-fields', TRUE)
if(!missing(`o-tables`)) `o-tables` <- checkValues(`o-tables`, c("all", "none"), 'o-tables', TRUE)
params = list(
'single_gene_id' = `single_gene_id`,
'bp_overlap_gte' = `bp_overlap_gte`,
'best_alignment_only' = `best_alignment_only`,
'high_confidence_only' = `high_confidence_only`,
'min_percent_identity' = `min_percent_identity`,
'min_percent_est_aligned' = `min_percent_est_aligned`
)
if(!missing(`o-fields`))
params[['o-fields']] = `o-fields`
if(!missing(`o-tables`))
params[['o-tables']] = `o-tables`
ans = getForm(.url, .params = params, ...)
if(is.null(.convert) && .json) return(fromJSON(ans))
if(!is.null(.convert))
.convert(ans)
else if(!is.null(type <- attr(ans, 'Content-Type')) && type == 'text/json')
convertJSON(ans)
else
ans
}
EstsBySimilarity =
function(
`BlastDatabaseType` = 'Transcripts', `BlastAlgorithm` = 'blastn', `BlastDatabaseOrganism` = 'Entamoeba histolytica HM-1:IMSS', `BlastQuerySequence`, `-e` = '10', `-v` = '50', `-b` = '50', `-filter` = 'yes', `o-fields` = 'NULL', `o-tables` = 'NULL', ..., .url = if(.json) 'http://eupathdb.org/eupathdb/webservices/EstQuestions/EstsBySimilarity.json' else 'http://eupathdb.org/eupathdb/webservices/EstQuestions/EstsBySimilarity.xml', .convert = NULL, .json = TRUE
)
{
`BlastDatabaseType` <- checkValues(`BlastDatabaseType`, c("Transcripts", "Proteins", "Genome", "ORF", "EST", "Assemblies",
"Isolates", "Genome Survey Sequences"), 'BlastDatabaseType', FALSE)
`BlastAlgorithm` <- checkValues(`BlastAlgorithm`, c("blastn", "blastp", "blastx", "tblastn", "tblastx"), 'BlastAlgorithm', FALSE)
`BlastDatabaseOrganism` <- checkValues(`BlastDatabaseOrganism`, c("Entamoeba histolytica HM-1:IMSS", "Entamoeba dispar SAW760",
"Encephalitozoon cuniculi GB-M1", "Trypanosoma cruzi", "Trypanosoma brucei",
"Leishmania major", "Leishmania infantum", "Leishmania braziliensis",
"Trypanosoma congolense", "Other Apicomplexan ESTs", "Plasmodium berghei",
"Plasmodium falciparum", "Plasmodium vivax", "Plasmodium yoelii",
"Toxoplasma gondii", "Neospora caninum", "Cryptosporidium parvum",
"Cryptosporidium muris", "Giardia", "Trichomonas vaginalis"), 'BlastDatabaseOrganism', TRUE)
`-filter` <- checkValues(`-filter`, c("yes", "no"), '-filter', FALSE)
if(!missing(`o-fields`)) `o-fields` <- checkValues(`o-fields`, c("all", "none", "primary_key", "organism", "length", "dbest_name",
"assembly_source_id", "vector", "stage", "organism_text", "ncbi_tax_id",
"sequence", "wdk_weight"), 'o-fields', TRUE)
if(!missing(`o-tables`)) `o-tables` <- checkValues(`o-tables`, c("all", "none"), 'o-tables', TRUE)
params = list(
'BlastDatabaseType' = `BlastDatabaseType`,
'BlastAlgorithm' = `BlastAlgorithm`,
'BlastDatabaseOrganism' = `BlastDatabaseOrganism`,
'BlastQuerySequence' = `BlastQuerySequence`,
'-e' = `-e`,
'-v' = `-v`,
'-b' = `-b`,
'-filter' = `-filter`
)
if(!missing(`o-fields`))
params[['o-fields']] = `o-fields`
if(!missing(`o-tables`))
params[['o-tables']] = `o-tables`
ans = getForm(.url, .params = params, ...)
if(is.null(.convert) && .json) return(fromJSON(ans))
if(!is.null(.convert))
.convert(ans)
else if(!is.null(type <- attr(ans, 'Content-Type')) && type == 'text/json')
convertJSON(ans)
else
ans
}
EstsByLocation =
function(
`organism` = 'Plasmodium falciparum', `chromosomeOptional` = 'Choose chromosome', `sequenceId` = 'NULL', `start_point` = '1', `end_point` = '0', `libraryId` = 'Ugandan isolate UAM12 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM13 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM14 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM15 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM16 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM17 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM18 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM20 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM21 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM22 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM23 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM25 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM26 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM27 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM28 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM29 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM31 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM32 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM33 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM34 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM35 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM36 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM37 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM38 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM39 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM40 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM41 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM42 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM43 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM44 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM45 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM46 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM47 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM48 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM49 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM50 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM51 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM52 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM53 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS03 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS06 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS07 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS08 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS10 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS11 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS12 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS13 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS14 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS16 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS17 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS18 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS19 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS20 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS21 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS22 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS23 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS24 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS25 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS26 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS27 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS28 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS29 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS31 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS32 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS33 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS34 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS36 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS37 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS38 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS39 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS40 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS41 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS43 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS44 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS45 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS46 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS47 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS48 Pf var gene cDNA (Trophozoite),Ugandan isolate UKM19 Pf Ring stage var gene cDNA,Ugandan isolate UKM19 Pf Trophozoite stage var gene cDNA,Ugandan isolate UKM64 Pf Ring stage var gene cDNA,Ugandan isolate UKM64 Pf Trophozoite stage var gene cDNA,Ugandan isolate UKS1 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS10 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS12 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS13 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS14 Pf Ring stage var gene cDNA,Ugandan isolate UKS14 Pf Trophozoite stage var gene cDNA,Ugandan isolate UKS14 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS15 Pf Ring stage var gene cDNA,Ugandan isolate UKS15 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS17 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS2 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS25 Pf Ring stage var gene cDNA,Ugandan isolate UKS25 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS3 Pf Ring stage var gene cDNA,Ugandan isolate UKS3 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS4 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS47 Pf Ring stage var gene cDNA,Ugandan isolate UKS47 Pf Trophozoite stage var gene cDNA,Ugandan isolate UKS5 Pf Ring stage var gene cDNA,Ugandan isolate UKS5 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS7 Pf Ring stage var gene cDNA,Ugandan isolate UKS7 Pf Trophozoite stage var gene cDNA,Ugandan isolate UKS7 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS9 Pf var gene cDNA (Trophozoite),VARPB11A ( ),VARPB11B ( ),VARPB13A ( ),VARPB13C ( ),VARPB13D ( ),VARPB13G ( ),VARPB13H ( ),VARPB14A ( ),VARPB14B ( ),VARPB14C ( ),VARPB14D ( ),VARPB15A ( ),VARPB15C ( ),VARPB15E ( ),VARPB16A ( ),VARPB16G ( ),VARPB17A ( ),VARPB17D ( ),VARPB17G ( ),VARPB18A ( ),VARPB18C ( ),VARPB18F ( ),VARPB18H ( ),VARPB19B ( ),VARPB19D ( ),VARPB19H ( ),VARPB1C ( ),VARPB1D ( ),VARPB1E ( ),VARPB1F ( ),VARPB1G ( ),VARPB1H ( ),VARPB20B ( ),VARPB20D ( ),VARPB20F ( ),VARPB20G ( ),VARPB21A ( ),VARPB21B ( ),VARPB21E ( ),VARPB21G ( ),VARPB21H ( ),VARPB22A ( ),VARPB22B ( ),VARPB22C ( ),VARPB22D ( ),VARPB22E ( ),VARPB22F ( ),VARPB22G ( ),VARPB22H ( ),VARPB23B ( ),VARPB23D ( ),VARPB23E ( ),VARPB23F ( ),VARPB23G ( ),VARPB23H ( ),VARPB24A ( ),VARPB24B ( ),VARPB24C ( ),VARPB24D ( ),VARPB24E ( ),VARPB24G ( ),VARPB24H ( ),VARPB25A ( ),VARPB25B ( ),VARPB25C ( ),VARPB25E ( ),VARPB25F ( ),VARPB25G ( ),VARPB26B ( ),VARPB26D ( ),VARPB26E ( ),VARPB26F ( ),VARPB26G ( ),VARPB26H ( ),VARPB27A ( ),VARPB27B ( ),VARPB27C ( ),VARPB27D ( ),VARPB27E ( ),VARPB27F ( ),VARPB27G ( ),VARPB27H ( ),VARPB28A ( ),VARPB28B ( ),VARPB28C ( ),VARPB28E ( ),VARPB28F ( ),VARPB28G ( ),VARPB29A ( ),VARPB29B ( ),VARPB29C ( ),VARPB29E ( ),VARPB29F ( ),VARPB29G ( ),VARPB29H ( ),VARPB2A ( ),VARPB2D ( ),VARPB2E ( ),VARPB2F ( ),VARPB30A ( ),VARPB31A ( ),VARPB31B ( ),VARPB31D ( ),VARPB31F ( ),VARPB31G ( ),VARPB31H ( ),VARPB32C ( ),VARPB32F ( ),VARPB8B ( ),VARPB8C ( ),VARPB8D ( ),VARPB8F ( ),VARPB8G ( ),VARPB8H ( ),VARPB9A ( ),VARPB9B ( ),VARPB9C ( ),VARPB9H ( ),WatanabePf3D7_cultured,WatanabePv,WatanabePy17XL,XPB Sugano cDNA library (erythrocytic stage),XPF Sugano cDNA library (erythrocytic stage),XPV Sugano cDNA library (erythrocytic stage),XPYs Sugano cDNA library (erythrocytic stage),XPYw Sugano cDNA library (erythrocytic stage),Zhang/Gardner Pf 3D7 mixed asexual (Asexual stage),cbsPfHB3.1; Debopam Chakrabarti,czapPFDd2.1; Debopam Chakrabarti,ookinete library (12 h; 18h and 24 h after in vitro culture),Nc 1314 Tachyzoite cDNA,Nc-1 Tachyzoite cDNA Library,Nc-1 Tachyzoite cDNA Library 2,Nc-1 pZ Tachyzoite cDNA Library,Nc-1Tachyzoite cDNA,Nc-LIV Tachyzoite cDNA Library,Neospora caninum,Neospora caninum Lambda Zap cDNA library,RH tachyzoite cDNA library,Tg CAST Tachyzoite cDNA Library,Tg CAST Tachyzoite cDNA Library 2,Tg COUG Tachyzoite cDNA Library,TgMAS Tachyzoite cDNA Library,TgME49 3 day invitro bradyzoite,TgME49 B7 Tachyzoite cDNA Library 1,TgME49 B7 Tachyzoite cDNA Library 2,TgME49 Tachyzoite cDNA,TgME49 invivo Bradyzoite cDNA (in vitro Bradyzoite; 6day),TgME49 invivo Bradyzoite cDNA size selected,TgME49cDNA (in vitro Bradyzoite; 6day),TgRH Tachyzoite FL cDNA,TgRH Tachyzoite Norm 1 cDNA Library,TgRH Tachyzoite Norm 5 cDNA Library,TgRH Tachyzoite Norm 7 cDNA Library,TgRH Tachyzoite Subtracted cDNA Library,TgRH Tachyzoite cDNA,TgRH*-Tachyzoite cDNA,TgRHcDNA,TgVEG Fully sporulated oocyst cDNA (Fully sporulated oocysts),TgVEG Partially sporulated oocyst cDNA (Partially sporulated oocysts),TgVEG-Tachyzoite cDNA,TgVEG118 Tachyzoite cDNA Library,TgVEG118 Tachyzoite cDNA Library-2,TgZAP-cDNA1 (tachyzoite),Toxoplasma gondii,Toxoplasma gondii Bradyzoite Library (Bradyzoite developmental stage),Toxoplasma gondii Tachyzoite Library (Tachyzoite developmental stage),Toxoplasma gondii encystation; subtracted cDNA,Toxoplasma gondii mRNA (T.Koyama),WatanabeTgRH (tachyzoites),differentially expressed gene in tachyzoite stage of Neospora caninum Korea isolate Nc-Kr2 (Tachy...,Cold-induced pseudocyst (TvCS) (Pseudocyst stage),Cot1000 normalized T1 cDNA library,Cot6 normalized T1 cDNA library,Fibronectin-mediated cytoadherence (TvFN) (Amoeboid stage),G2/M trophozoite (TvG2M) (G1/S phase),HMW C1 cDNA library,Low glucose culture (TvLG),Low iron culture (TvLI),Normal unsynchronized culture (TvEST) (Unsynchronized culture),Trichomonas vaginalis,VEC-mediated cytoadherence (TvVEC) (Amoeboid stage),non-normalized T1 cDNA library,Bloodstream form of serodeme ILTat1.1,Differentially expressed Trypanosoma brucei mRNAs,Leishmania braziliensis,Leishmania braziliensis amastigote stage; 72 hours post infection,Leishmania braziliensis procyclic stage; logarithmic growth phase,Leishmania infantum,Leishmania major,Leishmania major Amastigote Lambda Zap II library,Leishmania major Amastigote full length cDNA library,Leishmania major promastigote full length cDNA library from early logarithmic stage (day 3),Leishmania major promastigote full length cDNA library from logarithmic stage (day 7),Leishmania major promastigote full length cDNA library from stationary stage (day 10),Leishmania mexicana,LmLV39cDNA,MVAT4 bloodstream form of serodeme WRATat1.1,Random insertions of transposon MosHYG in Leishmania major (promastigote),SM-Lib-Tc Tehuantepec 17LER,SM-Lib-Tc Tehuantepec 17WTS,SM-Lib-Tc Y BZR,Stage-specific mRNA,T. Cruzi epimastigote normalised cDNA Library,T. cruzi epimastigote normalised cDNA Library,T. cruzi epimastigote normalized cDNA Library,T.cruzi epimastigote non-normalized cDNA Library,T.cruzi epimastigote normalized cDNA Library,TcAM (amastigote-like),TcT-E (trypomastigote),TcTR (trypomastigote),Trypanosoma brucei,Trypanosoma brucei rhodesiense ZAP II library (Insect form),Trypanosoma brucei strain 927 ESTs,Trypanosoma congolense,Trypanosoma congolense isolate IL300 bloodstream stage,Trypanosoma congolense isolate IL300 epimastigote stage,VARPB34A ( ),VARPB34E ( ),VARPB34F ( ),VARPB34H ( ),VARPB35D ( ),VARPB35F ( ),VARPB35G ( ),VARPB35H ( ),VARPB36C ( ),VARPB36D ( ),VARPB36H ( ),VARPB39B ( ),VARPB39C ( ),VARPB39D ( ),VARPB39E ( ),VARPB39G ( ),VARPB39H ( ),VARPB3A ( ),VARPB3B ( ),VARPB3C ( ),VARPB3D ( ),VARPB3E ( ),VARPB3F ( ),VARPB3G ( ),VARPB3H ( ),VARPB40A ( ),VARPB40D ( ),VARPB40E ( ),VARPB40F ( ),VARPB40G ( ),VARPB40H ( ),VARPB41F ( ),VARPB42B ( ),VARPB42C ( ),VARPB42D ( ),VARPB42F ( ),VARPB42G ( ),VARPB42H ( ),VARPB43B ( ),VARPB43C ( ),VARPB43D ( ),VARPB43E ( ),VARPB43F ( ),VARPB43G ( ),VARPB43H ( ),VARPB47E ( ),VARPB47F ( ),VARPB47G ( ),VARPB48A ( ),VARPB48B ( ),VARPB48C ( ),VARPB48D ( ),VARPB48E ( ),VARPB48G ( ),VARPB48H ( ),VARPB49F ( ),VARPB49H ( ),VARPB4A ( ),VARPB4B ( ),VARPB4C ( ),VARPB4D ( ),VARPB4E ( ),VARPB4F ( ),VARPB4G ( ),VARPB4H ( ),VARPB50E ( ),VARPB50F ( ),VARPB50G ( ),VARPB50H ( ),VARPB51A ( ),VARPB51B ( ),VARPB51F ( ),VARPB51G ( ),VARPB51H ( ),VARPB53A ( ),VARPB53B ( ),VARPB53C ( ),VARPB53D ( ),VARPB53E ( ),VARPB53F ( ),VARPB53G ( ),VARPB53H ( ),VARPB54A ( ),VARPB54B ( ),VARPB54C ( ),VARPB54D ( ),VARPB54E ( ),VARPB54F ( ),VARPB54G ( ),VARPB54H ( ),VARPB55A ( ),VARPB55B ( ),VARPB55C ( ),VARPB55D ( ),VARPB55F ( ),VARPB55G ( ),VARPB55H ( ),VARPB56A ( ),VARPB56B ( ),VARPB56C ( ),VARPB56D ( ),VARPB56E ( ),VARPB56F ( ),VARPB56G ( ),VARPB56H ( ),VARPB57A ( ),VARPB57B ( ),VARPB57C ( ),VARPB58A ( ),VARPB58B ( ),VARPB58C ( ),VARPB58D ( ),VARPB58E ( ),VARPB58F ( ),VARPB58G ( ),VARPB58H ( ),VARPB59A ( ),VARPB59B ( ),VARPB59C ( ),VARPB59D ( ),VARPB59E ( ),VARPB59F ( ),VARPB59G ( ),VARPB59H ( ),VARPB5A ( ),VARPB5B ( ),VARPB5C ( ),VARPB5D ( ),VARPB5E ( ),VARPB5F ( ),VARPB5G ( ),VARPB5H ( ),VARPB60A ( ),VARPB60B ( ),VARPB60C ( ),VARPB6A ( ),VARPB6B ( ),VARPB6C ( ),VARPB6D ( ),VARPB6E ( ),VARPB6F ( ),VARPB6G ( ),VARPB6H ( ),VARPB7A ( ),VARPB7B ( ),VARPB7C ( ),VARPB7D ( ),VARPB7E ( ),VARPB7F ( ),VARPB7G ( ),VARPB7H ( ),VARPB8A ( ),E. histolytica Normalized cDNA library,Entamoeba cDNA clone 6 (trophozoite),Entamoeba cDNA to mRNA (trophozoite),Entamoeba dispar,Entamoeba dispar cDNAs (trophozoite),Entamoeba histolytica,Entamoeba histolytica HM-1:IMSS,Entamoeba histolytica HM-1:IMSS mRNA (Tomoo Tanaka) (trophozoite),Entamoeba histolytica YS-27,Entamoeba histolytica trophozoite,C. parvum KSU-1 normalized sporozoite,Cryptosporidium muris,Cryptosporidium muris (strain RN66) cDNA library; stage oocyst,Cryptosporidium parvum,Pooled Cryptosporidium parvum KSU-1 enriched 24-48hr post-infection; in-vitro non-normalized nano...,WatanabeCpHNJ-1 (oocyst),XCP Sugano cDNA library (sporozoite stage),pSKIIminusCpIOWAsporoLib2 (sporozoite),uniZAPCpIOWAsporoLib1 (sporozoite),uniZAPCpIOWAsporoLib3 (sporozoite),Giardia Assemblage,Giardia lamblia trophozoite (Trophozoite),trophozoite cDNA,Encephalitozoon cuniculi,RACE-PCR products from Encephalitozoon cuniculi (Dormant spores),Blood stage Plasmodium falciparum cDNA library PFExtensions,Blood stage Plasmodium falciparum cDNA library PfBamH1,Blood stage Plasmodium falciparum cDNA library PfSau3a,Blood stage Plasmodium falciparum cDNA library PfSuOrig,Field isolate cDNA library,GenoScope Schizont enriched,In vitro adapted parasite UAM52b Pf Ring stage var gene cDNA,In vitro adapted parasite UAM52b Pf Trophozoite stage var gene cDNA,In vitro adapted parasite UAS22b Pf Ring stage var gene cDNA,In vitro adapted parasite UAS22b Pf Trophozoite stage var gene cDNA,In vitro adapted parasite UAS29b Pf Ring stage var gene cDNA,In vitro adapted parasite UAS29b Pf Trophozoite stage var gene cDNA,In vitro adapted parasite UAS31b Pf Ring stage var gene cDNA,In vitro adapted parasite UAS31b Pf Trophozoite stage var gene cDNA,In vitro adapted parasite UAS41b Pf Ring stage var gene cDNA,In vitro adapted parasite UAS41b Pf Trophozoite stage var gene cDNA,Laboratory isolate 3D7AH1 Pf Ring stage var gene cDNA,Laboratory isolate 3D7AH1 Pf Trophozoite stage var gene cDNA,Laboratory isolate 3D7AH1S.2 Pf Ring stage var gene cDNA,Laboratory isolate 3D7AH1S.2 Pf Trophozoite stage var gene cDNA,Laboratory isolate 7G8 Pf Ring stage var gene cDNA,Laboratory isolate 7G8 Pf Trophozoite stage var gene cDNA,Laboratory isolate DD2 Pf Ring stage var gene cDNA,Laboratory isolate DD2 Pf Trophozoite stage var gene cDNA,Laboratory isolate FCR3 Pf Ring stage var gene cDNA,Laboratory isolate FCR3 Pf Trophozoite stage var gene cDNA,Laboratory isolate FCR3s1.6 Pf Ring stage var gene cDNA,Laboratory isolate FCR3s1.6 Pf Trophozoite stage var gene cDNA,Laboratory isolate TM284 Pf Ring stage var gene cDNA,Laboratory isolate TM284 Pf Trophozoite stage var gene cDNA,Pb cDNA #17; Tommaso Pace; Marta Ponzi; and Clara Frontali (asynchronous blood stage),Pb cDNA #20; Charles Yowell and Jane Carlton (asynchronous blood stage),Pb sgSpz/ooSpz subtraction library,Plasmodium berghei,Plasmodium berghei NK65 salivary gland sporozoite,Plasmodium berghei cDNA library,Plasmodium berghei erythrocytic schizont,Plasmodium berghei liver stage parasite,Plasmodium berghei midgut sporozoite,Plasmodium berghei ookinete,Plasmodium berghei ookinete stage,Plasmodium berghei salivary grand sporozoite (salivary gland sporozoite),Plasmodium berghei strain ANKA erythrocytic stage,Plasmodium falciparum,Plasmodium falciparum 3D7 asexual cDNA,Plasmodium falciparum 3D7 gametocyte cDNA library (gametocyte (stage III-V)),Plasmodium falciparum FCB1 schizont,Plasmodium falciparum FcB1 schizont,Plasmodium falciparum NF54 (D.A.Fidock) (asynchronous asexual blood stage),Plasmodium falciparum cDNA pUC8 Express Library (late erythrocytic-stage parasite mRNA),Plasmodium vivax,Plasmodium yoelii,Plasmodium yoelii liver stage LCM cDNA library (40 hour liver schizont),Plasmodium yoelii sporozoite cDNA (sporozoites from salivary gland),Plasmodium yoelii yoelii from Anopheles stephensi midgut (oocyst),Plasmodium yoelli 17X axenic hepatic stages,PvBEcDNA (Assexual Blood Stages),PyBS (Asexual blood stages),SSH library of Plasmodium berghei strain K173 (erythrocytic stage),SSH library of Plasmodium berghei strain RQ (erythrocytic stage),Sugano Malaria cDNA library (erythrocytic stage),Ugandan isolate UAM05 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM08 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM09 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM11 Pf var gene cDNA (Trophozoite),Trypanosoma congolense isolate IL300 metacyclic stage,Trypanosoma congolense isolate IL300 normalised bloodstream stage,Trypanosoma congolense isolate IL300 normalised metacyclic stage,Trypanosoma congolense isolate IL300 procyclic stage,Trypanosoma cruzi,Trypanosoma cruzi CL Brener epimastigote,Trypanosoma cruzi Y (Tomoo Tanaka),Trypanosoma cruzi amastigote cDNA library,Trypanosoma cruzi differential display cDNA library,page (promastigote),sucrose-gradient-F23 (promastigote),sucrose-gradient-F25 (promastigote)', `best_alignment_only` = 'Yes', `high_confidence_only` = 'No', `min_percent_identity` = '90', `min_percent_est_aligned` = '20', `o-fields` = 'NULL', `o-tables` = 'NULL', ..., .url = if(.json) 'http://eupathdb.org/eupathdb/webservices/EstQuestions/EstsByLocation.json' else 'http://eupathdb.org/eupathdb/webservices/EstQuestions/EstsByLocation.xml', .convert = NULL, .json = TRUE
)
{
`organism` <- checkValues(`organism`, c("Cryptosporidium parvum", "Encephalitozoon cuniculi", "Plasmodium berghei",
"Plasmodium falciparum", "Plasmodium vivax", "Neospora caninum",
"Toxoplasma gondii GT1", "Toxoplasma gondii ME49", "Toxoplasma gondii VEG",
"Leishmania braziliensis", "Leishmania infantum", "Leishmania major",
"Leishmania mexicana", "Trypanosoma brucei Lister str...", "Trypanosoma brucei TREU927",
"Trypanosoma brucei gambiense", "Trypanosoma congolense", "Trypanosoma cruzi CL Brener E...",
"Trypanosoma cruzi CL Brener N..."), 'organism', FALSE)
`chromosomeOptional` <- checkValues(`chromosomeOptional`, c("36", "35", "34", "33", "32", "31", "30", "29", "28", "27",
"26", "25", "24", "5", "4", "3", "2", "1", "XI", "X", "IX", "VIII",
"VII", "VI", "V", "Choose chromosome", "chromosome 1", "chromosome 2",
"chromosome 3", "chromosome 4", "chromosome 5", "chromosome 6",
"chromosome 7", "chromosome 8", "I", "II", "III", "IV", "6",
"7", "8", "9", "10", "11", "12", "13", "14", "un", "Ia", "Ib",
"VIIa", "VIIb", "XII", "15", "16", "17", "18", "19", "20", "21",
"22", "23"), 'chromosomeOptional', FALSE)
`libraryId` <- checkValues(`libraryId`, "`EstsByLocation.libraryId.options`", 'libraryId', TRUE)
`best_alignment_only` <- checkValues(`best_alignment_only`, c("Yes", "No"), 'best_alignment_only', FALSE)
`high_confidence_only` <- checkValues(`high_confidence_only`, c("No", "Yes"), 'high_confidence_only', FALSE)
if(!missing(`o-fields`)) `o-fields` <- checkValues(`o-fields`, c("all", "none", "primary_key", "organism", "length", "dbest_name",
"assembly_source_id", "vector", "stage", "organism_text", "ncbi_tax_id",
"sequence", "wdk_weight", "est_location"), 'o-fields', TRUE)
if(!missing(`o-tables`)) `o-tables` <- checkValues(`o-tables`, c("all", "none"), 'o-tables', TRUE)
params = list(
'organism' = `organism`,
'chromosomeOptional' = `chromosomeOptional`,
'start_point' = `start_point`,
'end_point' = `end_point`,
'libraryId' = `libraryId`,
'best_alignment_only' = `best_alignment_only`,
'high_confidence_only' = `high_confidence_only`,
'min_percent_identity' = `min_percent_identity`,
'min_percent_est_aligned' = `min_percent_est_aligned`
)
if(!missing(`sequenceId`))
params[['sequenceId']] = `sequenceId`
if(!missing(`o-fields`))
params[['o-fields']] = `o-fields`
if(!missing(`o-tables`))
params[['o-tables']] = `o-tables`
ans = getForm(.url, .params = params, ...)
if(is.null(.convert) && .json) return(fromJSON(ans))
if(!is.null(.convert))
.convert(ans)
else if(!is.null(type <- attr(ans, 'Content-Type')) && type == 'text/json')
convertJSON(ans)
else
ans
}
`EstsByLocation.libraryId.options` =
c("Ugandan isolate UAM12 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM13 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM14 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM15 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM16 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM17 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM18 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM20 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM21 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM22 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM23 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM25 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM26 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM27 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM28 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM29 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM31 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM32 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM33 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM34 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM35 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM36 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM37 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM38 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM39 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM40 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM41 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM42 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM43 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM44 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM45 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM46 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM47 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM48 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM49 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM50 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM51 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM52 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM53 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS03 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS06 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS07 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS08 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS10 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS11 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS12 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS13 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS14 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS16 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS17 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS18 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS19 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS20 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS21 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS22 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS23 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS24 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS25 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS26 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS27 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS28 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS29 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS31 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS32 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS33 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS34 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS36 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS37 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS38 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS39 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS40 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS41 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS43 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS44 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS45 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS46 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS47 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS48 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKM19 Pf Ring stage var gene cDNA", "Ugandan isolate UKM19 Pf Trophozoite stage var gene cDNA",
"Ugandan isolate UKM64 Pf Ring stage var gene cDNA", "Ugandan isolate UKM64 Pf Trophozoite stage var gene cDNA",
"Ugandan isolate UKS1 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKS10 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS12 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKS13 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS14 Pf Ring stage var gene cDNA", "Ugandan isolate UKS14 Pf Trophozoite stage var gene cDNA",
"Ugandan isolate UKS14 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKS15 Pf Ring stage var gene cDNA",
"Ugandan isolate UKS15 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKS17 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS2 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKS25 Pf Ring stage var gene cDNA",
"Ugandan isolate UKS25 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKS3 Pf Ring stage var gene cDNA",
"Ugandan isolate UKS3 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKS4 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS47 Pf Ring stage var gene cDNA", "Ugandan isolate UKS47 Pf Trophozoite stage var gene cDNA",
"Ugandan isolate UKS5 Pf Ring stage var gene cDNA", "Ugandan isolate UKS5 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS7 Pf Ring stage var gene cDNA", "Ugandan isolate UKS7 Pf Trophozoite stage var gene cDNA",
"Ugandan isolate UKS7 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKS9 Pf var gene cDNA (Trophozoite)",
"VARPB11A ( )", "VARPB11B ( )", "VARPB13A ( )", "VARPB13C ( )",
"VARPB13D ( )", "VARPB13G ( )", "VARPB13H ( )", "VARPB14A ( )",
"VARPB14B ( )", "VARPB14C ( )", "VARPB14D ( )", "VARPB15A ( )",
"VARPB15C ( )", "VARPB15E ( )", "VARPB16A ( )", "VARPB16G ( )",
"VARPB17A ( )", "VARPB17D ( )", "VARPB17G ( )", "VARPB18A ( )",
"VARPB18C ( )", "VARPB18F ( )", "VARPB18H ( )", "VARPB19B ( )",
"VARPB19D ( )", "VARPB19H ( )", "VARPB1C ( )", "VARPB1D ( )",
"VARPB1E ( )", "VARPB1F ( )", "VARPB1G ( )", "VARPB1H ( )", "VARPB20B ( )",
"VARPB20D ( )", "VARPB20F ( )", "VARPB20G ( )", "VARPB21A ( )",
"VARPB21B ( )", "VARPB21E ( )", "VARPB21G ( )", "VARPB21H ( )",
"VARPB22A ( )", "VARPB22B ( )", "VARPB22C ( )", "VARPB22D ( )",
"VARPB22E ( )", "VARPB22F ( )", "VARPB22G ( )", "VARPB22H ( )",
"VARPB23B ( )", "VARPB23D ( )", "VARPB23E ( )", "VARPB23F ( )",
"VARPB23G ( )", "VARPB23H ( )", "VARPB24A ( )", "VARPB24B ( )",
"VARPB24C ( )", "VARPB24D ( )", "VARPB24E ( )", "VARPB24G ( )",
"VARPB24H ( )", "VARPB25A ( )", "VARPB25B ( )", "VARPB25C ( )",
"VARPB25E ( )", "VARPB25F ( )", "VARPB25G ( )", "VARPB26B ( )",
"VARPB26D ( )", "VARPB26E ( )", "VARPB26F ( )", "VARPB26G ( )",
"VARPB26H ( )", "VARPB27A ( )", "VARPB27B ( )", "VARPB27C ( )",
"VARPB27D ( )", "VARPB27E ( )", "VARPB27F ( )", "VARPB27G ( )",
"VARPB27H ( )", "VARPB28A ( )", "VARPB28B ( )", "VARPB28C ( )",
"VARPB28E ( )", "VARPB28F ( )", "VARPB28G ( )", "VARPB29A ( )",
"VARPB29B ( )", "VARPB29C ( )", "VARPB29E ( )", "VARPB29F ( )",
"VARPB29G ( )", "VARPB29H ( )", "VARPB2A ( )", "VARPB2D ( )",
"VARPB2E ( )", "VARPB2F ( )", "VARPB30A ( )", "VARPB31A ( )",
"VARPB31B ( )", "VARPB31D ( )", "VARPB31F ( )", "VARPB31G ( )",
"VARPB31H ( )", "VARPB32C ( )", "VARPB32F ( )", "VARPB8B ( )",
"VARPB8C ( )", "VARPB8D ( )", "VARPB8F ( )", "VARPB8G ( )", "VARPB8H ( )",
"VARPB9A ( )", "VARPB9B ( )", "VARPB9C ( )", "VARPB9H ( )", "WatanabePf3D7_cultured",
"WatanabePv", "WatanabePy17XL", "XPB Sugano cDNA library (erythrocytic stage)",
"XPF Sugano cDNA library (erythrocytic stage)", "XPV Sugano cDNA library (erythrocytic stage)",
"XPYs Sugano cDNA library (erythrocytic stage)", "XPYw Sugano cDNA library (erythrocytic stage)",
"Zhang/Gardner Pf 3D7 mixed asexual (Asexual stage)", "cbsPfHB3.1; Debopam Chakrabarti",
"czapPFDd2.1; Debopam Chakrabarti", "ookinete library (12 h; 18h and 24 h after in vitro culture)",
"Nc 1314 Tachyzoite cDNA", "Nc-1 Tachyzoite cDNA Library", "Nc-1 Tachyzoite cDNA Library 2",
"Nc-1 pZ Tachyzoite cDNA Library", "Nc-1Tachyzoite cDNA", "Nc-LIV Tachyzoite cDNA Library",
"Neospora caninum", "Neospora caninum Lambda Zap cDNA library",
"RH tachyzoite cDNA library", "Tg CAST Tachyzoite cDNA Library",
"Tg CAST Tachyzoite cDNA Library 2", "Tg COUG Tachyzoite cDNA Library",
"TgMAS Tachyzoite cDNA Library", "TgME49 3 day invitro bradyzoite",
"TgME49 B7 Tachyzoite cDNA Library 1", "TgME49 B7 Tachyzoite cDNA Library 2",
"TgME49 Tachyzoite cDNA", "TgME49 invivo Bradyzoite cDNA (in vitro Bradyzoite; 6day)",
"TgME49 invivo Bradyzoite cDNA size selected", "TgME49cDNA (in vitro Bradyzoite; 6day)",
"TgRH Tachyzoite FL cDNA", "TgRH Tachyzoite Norm 1 cDNA Library",
"TgRH Tachyzoite Norm 5 cDNA Library", "TgRH Tachyzoite Norm 7 cDNA Library",
"TgRH Tachyzoite Subtracted cDNA Library", "TgRH Tachyzoite cDNA",
"TgRH*-Tachyzoite cDNA", "TgRHcDNA", "TgVEG Fully sporulated oocyst cDNA (Fully sporulated oocysts)",
"TgVEG Partially sporulated oocyst cDNA (Partially sporulated oocysts)",
"TgVEG-Tachyzoite cDNA", "TgVEG118 Tachyzoite cDNA Library",
"TgVEG118 Tachyzoite cDNA Library-2", "TgZAP-cDNA1 (tachyzoite)",
"Toxoplasma gondii", "Toxoplasma gondii Bradyzoite Library (Bradyzoite developmental stage)",
"Toxoplasma gondii Tachyzoite Library (Tachyzoite developmental stage)",
"Toxoplasma gondii encystation; subtracted cDNA", "Toxoplasma gondii mRNA (T.Koyama)",
"WatanabeTgRH (tachyzoites)", "differentially expressed gene in tachyzoite stage of Neospora caninum Korea isolate Nc-Kr2 (Tachy...",
"Cold-induced pseudocyst (TvCS) (Pseudocyst stage)", "Cot1000 normalized T1 cDNA library",
"Cot6 normalized T1 cDNA library", "Fibronectin-mediated cytoadherence (TvFN) (Amoeboid stage)",
"G2/M trophozoite (TvG2M) (G1/S phase)", "HMW C1 cDNA library",
"Low glucose culture (TvLG)", "Low iron culture (TvLI)", "Normal unsynchronized culture (TvEST) (Unsynchronized culture)",
"Trichomonas vaginalis", "VEC-mediated cytoadherence (TvVEC) (Amoeboid stage)",
"non-normalized T1 cDNA library", "Bloodstream form of serodeme ILTat1.1",
"Differentially expressed Trypanosoma brucei mRNAs", "Leishmania braziliensis",
"Leishmania braziliensis amastigote stage; 72 hours post infection",
"Leishmania braziliensis procyclic stage; logarithmic growth phase",
"Leishmania infantum", "Leishmania major", "Leishmania major Amastigote Lambda Zap II library",
"Leishmania major Amastigote full length cDNA library", "Leishmania major promastigote full length cDNA library from early logarithmic stage (day 3)",
"Leishmania major promastigote full length cDNA library from logarithmic stage (day 7)",
"Leishmania major promastigote full length cDNA library from stationary stage (day 10)",
"Leishmania mexicana", "LmLV39cDNA", "MVAT4 bloodstream form of serodeme WRATat1.1",
"Random insertions of transposon MosHYG in Leishmania major (promastigote)",
"SM-Lib-Tc Tehuantepec 17LER", "SM-Lib-Tc Tehuantepec 17WTS",
"SM-Lib-Tc Y BZR", "Stage-specific mRNA", "T. Cruzi epimastigote normalised cDNA Library",
"T. cruzi epimastigote normalised cDNA Library", "T. cruzi epimastigote normalized cDNA Library",
"T.cruzi epimastigote non-normalized cDNA Library", "T.cruzi epimastigote normalized cDNA Library",
"TcAM (amastigote-like)", "TcT-E (trypomastigote)", "TcTR (trypomastigote)",
"Trypanosoma brucei", "Trypanosoma brucei rhodesiense ZAP II library (Insect form)",
"Trypanosoma brucei strain 927 ESTs", "Trypanosoma congolense",
"Trypanosoma congolense isolate IL300 bloodstream stage", "Trypanosoma congolense isolate IL300 epimastigote stage",
"VARPB34A ( )", "VARPB34E ( )", "VARPB34F ( )", "VARPB34H ( )",
"VARPB35D ( )", "VARPB35F ( )", "VARPB35G ( )", "VARPB35H ( )",
"VARPB36C ( )", "VARPB36D ( )", "VARPB36H ( )", "VARPB39B ( )",
"VARPB39C ( )", "VARPB39D ( )", "VARPB39E ( )", "VARPB39G ( )",
"VARPB39H ( )", "VARPB3A ( )", "VARPB3B ( )", "VARPB3C ( )",
"VARPB3D ( )", "VARPB3E ( )", "VARPB3F ( )", "VARPB3G ( )", "VARPB3H ( )",
"VARPB40A ( )", "VARPB40D ( )", "VARPB40E ( )", "VARPB40F ( )",
"VARPB40G ( )", "VARPB40H ( )", "VARPB41F ( )", "VARPB42B ( )",
"VARPB42C ( )", "VARPB42D ( )", "VARPB42F ( )", "VARPB42G ( )",
"VARPB42H ( )", "VARPB43B ( )", "VARPB43C ( )", "VARPB43D ( )",
"VARPB43E ( )", "VARPB43F ( )", "VARPB43G ( )", "VARPB43H ( )",
"VARPB47E ( )", "VARPB47F ( )", "VARPB47G ( )", "VARPB48A ( )",
"VARPB48B ( )", "VARPB48C ( )", "VARPB48D ( )", "VARPB48E ( )",
"VARPB48G ( )", "VARPB48H ( )", "VARPB49F ( )", "VARPB49H ( )",
"VARPB4A ( )", "VARPB4B ( )", "VARPB4C ( )", "VARPB4D ( )", "VARPB4E ( )",
"VARPB4F ( )", "VARPB4G ( )", "VARPB4H ( )", "VARPB50E ( )",
"VARPB50F ( )", "VARPB50G ( )", "VARPB50H ( )", "VARPB51A ( )",
"VARPB51B ( )", "VARPB51F ( )", "VARPB51G ( )", "VARPB51H ( )",
"VARPB53A ( )", "VARPB53B ( )", "VARPB53C ( )", "VARPB53D ( )",
"VARPB53E ( )", "VARPB53F ( )", "VARPB53G ( )", "VARPB53H ( )",
"VARPB54A ( )", "VARPB54B ( )", "VARPB54C ( )", "VARPB54D ( )",
"VARPB54E ( )", "VARPB54F ( )", "VARPB54G ( )", "VARPB54H ( )",
"VARPB55A ( )", "VARPB55B ( )", "VARPB55C ( )", "VARPB55D ( )",
"VARPB55F ( )", "VARPB55G ( )", "VARPB55H ( )", "VARPB56A ( )",
"VARPB56B ( )", "VARPB56C ( )", "VARPB56D ( )", "VARPB56E ( )",
"VARPB56F ( )", "VARPB56G ( )", "VARPB56H ( )", "VARPB57A ( )",
"VARPB57B ( )", "VARPB57C ( )", "VARPB58A ( )", "VARPB58B ( )",
"VARPB58C ( )", "VARPB58D ( )", "VARPB58E ( )", "VARPB58F ( )",
"VARPB58G ( )", "VARPB58H ( )", "VARPB59A ( )", "VARPB59B ( )",
"VARPB59C ( )", "VARPB59D ( )", "VARPB59E ( )", "VARPB59F ( )",
"VARPB59G ( )", "VARPB59H ( )", "VARPB5A ( )", "VARPB5B ( )",
"VARPB5C ( )", "VARPB5D ( )", "VARPB5E ( )", "VARPB5F ( )", "VARPB5G ( )",
"VARPB5H ( )", "VARPB60A ( )", "VARPB60B ( )", "VARPB60C ( )",
"VARPB6A ( )", "VARPB6B ( )", "VARPB6C ( )", "VARPB6D ( )", "VARPB6E ( )",
"VARPB6F ( )", "VARPB6G ( )", "VARPB6H ( )", "VARPB7A ( )", "VARPB7B ( )",
"VARPB7C ( )", "VARPB7D ( )", "VARPB7E ( )", "VARPB7F ( )", "VARPB7G ( )",
"VARPB7H ( )", "VARPB8A ( )", "E. histolytica Normalized cDNA library",
"Entamoeba cDNA clone 6 (trophozoite)", "Entamoeba cDNA to mRNA (trophozoite)",
"Entamoeba dispar", "Entamoeba dispar cDNAs (trophozoite)", "Entamoeba histolytica",
"Entamoeba histolytica HM-1:IMSS", "Entamoeba histolytica HM-1:IMSS mRNA (Tomoo Tanaka) (trophozoite)",
"Entamoeba histolytica YS-27", "Entamoeba histolytica trophozoite",
"C. parvum KSU-1 normalized sporozoite", "Cryptosporidium muris",
"Cryptosporidium muris (strain RN66) cDNA library; stage oocyst",
"Cryptosporidium parvum", "Pooled Cryptosporidium parvum KSU-1 enriched 24-48hr post-infection; in-vitro non-normalized nano...",
"WatanabeCpHNJ-1 (oocyst)", "XCP Sugano cDNA library (sporozoite stage)",
"pSKIIminusCpIOWAsporoLib2 (sporozoite)", "uniZAPCpIOWAsporoLib1 (sporozoite)",
"uniZAPCpIOWAsporoLib3 (sporozoite)", "Giardia Assemblage", "Giardia lamblia trophozoite (Trophozoite)",
"trophozoite cDNA", "Encephalitozoon cuniculi", "RACE-PCR products from Encephalitozoon cuniculi (Dormant spores)",
"Blood stage Plasmodium falciparum cDNA library PFExtensions",
"Blood stage Plasmodium falciparum cDNA library PfBamH1", "Blood stage Plasmodium falciparum cDNA library PfSau3a",
"Blood stage Plasmodium falciparum cDNA library PfSuOrig", "Field isolate cDNA library",
"GenoScope Schizont enriched", "In vitro adapted parasite UAM52b Pf Ring stage var gene cDNA",
"In vitro adapted parasite UAM52b Pf Trophozoite stage var gene cDNA",
"In vitro adapted parasite UAS22b Pf Ring stage var gene cDNA",
"In vitro adapted parasite UAS22b Pf Trophozoite stage var gene cDNA",
"In vitro adapted parasite UAS29b Pf Ring stage var gene cDNA",
"In vitro adapted parasite UAS29b Pf Trophozoite stage var gene cDNA",
"In vitro adapted parasite UAS31b Pf Ring stage var gene cDNA",
"In vitro adapted parasite UAS31b Pf Trophozoite stage var gene cDNA",
"In vitro adapted parasite UAS41b Pf Ring stage var gene cDNA",
"In vitro adapted parasite UAS41b Pf Trophozoite stage var gene cDNA",
"Laboratory isolate 3D7AH1 Pf Ring stage var gene cDNA", "Laboratory isolate 3D7AH1 Pf Trophozoite stage var gene cDNA",
"Laboratory isolate 3D7AH1S.2 Pf Ring stage var gene cDNA", "Laboratory isolate 3D7AH1S.2 Pf Trophozoite stage var gene cDNA",
"Laboratory isolate 7G8 Pf Ring stage var gene cDNA", "Laboratory isolate 7G8 Pf Trophozoite stage var gene cDNA",
"Laboratory isolate DD2 Pf Ring stage var gene cDNA", "Laboratory isolate DD2 Pf Trophozoite stage var gene cDNA",
"Laboratory isolate FCR3 Pf Ring stage var gene cDNA", "Laboratory isolate FCR3 Pf Trophozoite stage var gene cDNA",
"Laboratory isolate FCR3s1.6 Pf Ring stage var gene cDNA", "Laboratory isolate FCR3s1.6 Pf Trophozoite stage var gene cDNA",
"Laboratory isolate TM284 Pf Ring stage var gene cDNA", "Laboratory isolate TM284 Pf Trophozoite stage var gene cDNA",
"Pb cDNA #17; Tommaso Pace; Marta Ponzi; and Clara Frontali (asynchronous blood stage)",
"Pb cDNA #20; Charles Yowell and Jane Carlton (asynchronous blood stage)",
"Pb sgSpz/ooSpz subtraction library", "Plasmodium berghei", "Plasmodium berghei NK65 salivary gland sporozoite",
"Plasmodium berghei cDNA library", "Plasmodium berghei erythrocytic schizont",
"Plasmodium berghei liver stage parasite", "Plasmodium berghei midgut sporozoite",
"Plasmodium berghei ookinete", "Plasmodium berghei ookinete stage",
"Plasmodium berghei salivary grand sporozoite (salivary gland sporozoite)",
"Plasmodium berghei strain ANKA erythrocytic stage", "Plasmodium falciparum",
"Plasmodium falciparum 3D7 asexual cDNA", "Plasmodium falciparum 3D7 gametocyte cDNA library (gametocyte (stage III-V))",
"Plasmodium falciparum FCB1 schizont", "Plasmodium falciparum FcB1 schizont",
"Plasmodium falciparum NF54 (D.A.Fidock) (asynchronous asexual blood stage)",
"Plasmodium falciparum cDNA pUC8 Express Library (late erythrocytic-stage parasite mRNA)",
"Plasmodium vivax", "Plasmodium yoelii", "Plasmodium yoelii liver stage LCM cDNA library (40 hour liver schizont)",
"Plasmodium yoelii sporozoite cDNA (sporozoites from salivary gland)",
"Plasmodium yoelii yoelii from Anopheles stephensi midgut (oocyst)",
"Plasmodium yoelli 17X axenic hepatic stages", "PvBEcDNA (Assexual Blood Stages)",
"PyBS (Asexual blood stages)", "SSH library of Plasmodium berghei strain K173 (erythrocytic stage)",
"SSH library of Plasmodium berghei strain RQ (erythrocytic stage)",
"Sugano Malaria cDNA library (erythrocytic stage)", "Ugandan isolate UAM05 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM08 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM09 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM11 Pf var gene cDNA (Trophozoite)", "Trypanosoma congolense isolate IL300 metacyclic stage",
"Trypanosoma congolense isolate IL300 normalised bloodstream stage",
"Trypanosoma congolense isolate IL300 normalised metacyclic stage",
"Trypanosoma congolense isolate IL300 procyclic stage", "Trypanosoma cruzi",
"Trypanosoma cruzi CL Brener epimastigote", "Trypanosoma cruzi Y (Tomoo Tanaka)",
"Trypanosoma cruzi amastigote cDNA library", "Trypanosoma cruzi differential display cDNA library",
"page (promastigote)", "sucrose-gradient-F23 (promastigote)",
"sucrose-gradient-F25 (promastigote)")
EstsByLibrary =
function(
`libraryId` = 'E. histolytica Normalized cDNA library,Entamoeba cDNA clone 6 (trophozoite),Entamoeba cDNA to mRNA (trophozoite),Entamoeba dispar,Entamoeba dispar cDNAs (trophozoite),Entamoeba histolytica,Entamoeba histolytica HM-1:IMSS,Entamoeba histolytica HM-1:IMSS mRNA (Tomoo Tanaka) (trophozoite),Entamoeba histolytica YS-27,Entamoeba histolytica trophozoite,C. parvum KSU-1 normalized sporozoite,Cryptosporidium muris,Cryptosporidium muris (strain RN66) cDNA library; stage oocyst,Cryptosporidium parvum,Pooled Cryptosporidium parvum KSU-1 enriched 24-48hr post-infection; in-vitro non-normalized nano...,WatanabeCpHNJ-1 (oocyst),XCP Sugano cDNA library (sporozoite stage),pSKIIminusCpIOWAsporoLib2 (sporozoite),uniZAPCpIOWAsporoLib1 (sporozoite),uniZAPCpIOWAsporoLib3 (sporozoite),Giardia Assemblage,Giardia lamblia trophozoite (Trophozoite),trophozoite cDNA,Encephalitozoon cuniculi,RACE-PCR products from Encephalitozoon cuniculi (Dormant spores),Blood stage Plasmodium falciparum cDNA library PFExtensions,Blood stage Plasmodium falciparum cDNA library PfBamH1,Blood stage Plasmodium falciparum cDNA library PfSau3a,Blood stage Plasmodium falciparum cDNA library PfSuOrig,Field isolate cDNA library,GenoScope Schizont enriched,In vitro adapted parasite UAM52b Pf Ring stage var gene cDNA,In vitro adapted parasite UAM52b Pf Trophozoite stage var gene cDNA,In vitro adapted parasite UAS22b Pf Ring stage var gene cDNA,In vitro adapted parasite UAS22b Pf Trophozoite stage var gene cDNA,In vitro adapted parasite UAS29b Pf Ring stage var gene cDNA,In vitro adapted parasite UAS29b Pf Trophozoite stage var gene cDNA,In vitro adapted parasite UAS31b Pf Ring stage var gene cDNA,In vitro adapted parasite UAS31b Pf Trophozoite stage var gene cDNA,In vitro adapted parasite UAS41b Pf Ring stage var gene cDNA,In vitro adapted parasite UAS41b Pf Trophozoite stage var gene cDNA,Laboratory isolate 3D7AH1 Pf Ring stage var gene cDNA,Laboratory isolate 3D7AH1 Pf Trophozoite stage var gene cDNA,Laboratory isolate 3D7AH1S.2 Pf Ring stage var gene cDNA,Laboratory isolate 3D7AH1S.2 Pf Trophozoite stage var gene cDNA,Laboratory isolate 7G8 Pf Ring stage var gene cDNA,Laboratory isolate 7G8 Pf Trophozoite stage var gene cDNA,Laboratory isolate DD2 Pf Ring stage var gene cDNA,Laboratory isolate DD2 Pf Trophozoite stage var gene cDNA,Laboratory isolate FCR3 Pf Ring stage var gene cDNA,Laboratory isolate FCR3 Pf Trophozoite stage var gene cDNA,Laboratory isolate FCR3s1.6 Pf Ring stage var gene cDNA,Laboratory isolate FCR3s1.6 Pf Trophozoite stage var gene cDNA,Laboratory isolate TM284 Pf Ring stage var gene cDNA,Laboratory isolate TM284 Pf Trophozoite stage var gene cDNA,Pb cDNA #17; Tommaso Pace; Marta Ponzi; and Clara Frontali (asynchronous blood stage),Pb cDNA #20; Charles Yowell and Jane Carlton (asynchronous blood stage),Pb sgSpz/ooSpz subtraction library,Plasmodium berghei,Plasmodium berghei NK65 salivary gland sporozoite,Plasmodium berghei cDNA library,Plasmodium berghei erythrocytic schizont,Plasmodium berghei liver stage parasite,Plasmodium berghei midgut sporozoite,Plasmodium berghei ookinete,Plasmodium berghei ookinete stage,Plasmodium berghei salivary grand sporozoite (salivary gland sporozoite),Plasmodium berghei strain ANKA erythrocytic stage,Plasmodium falciparum,Plasmodium falciparum 3D7 asexual cDNA,Plasmodium falciparum 3D7 gametocyte cDNA library (gametocyte (stage III-V)),Plasmodium falciparum FCB1 schizont,Plasmodium falciparum FcB1 schizont,Plasmodium falciparum NF54 (D.A.Fidock) (asynchronous asexual blood stage),Plasmodium falciparum cDNA pUC8 Express Library (late erythrocytic-stage parasite mRNA),Plasmodium vivax,Plasmodium yoelii,Plasmodium yoelii liver stage LCM cDNA library (40 hour liver schizont),Plasmodium yoelii sporozoite cDNA (sporozoites from salivary gland),Plasmodium yoelii yoelii from Anopheles stephensi midgut (oocyst),Plasmodium yoelli 17X axenic hepatic stages,PvBEcDNA (Assexual Blood Stages),PyBS (Asexual blood stages),SSH library of Plasmodium berghei strain K173 (erythrocytic stage),SSH library of Plasmodium berghei strain RQ (erythrocytic stage),Sugano Malaria cDNA library (erythrocytic stage),Ugandan isolate UAM05 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM08 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM09 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM11 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM12 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM13 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM14 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM15 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM16 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM17 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM18 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM20 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM21 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM22 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM23 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM25 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM26 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM27 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM28 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM29 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM31 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM32 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM33 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM34 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM35 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM36 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM37 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM38 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM39 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM40 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM41 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM42 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM43 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM44 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM45 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM46 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM47 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM48 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM49 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM50 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM51 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM52 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM53 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS03 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS06 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS07 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS08 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS10 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS11 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS12 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS13 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS14 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS16 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS17 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS18 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS19 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS20 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS21 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS22 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS23 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS24 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS25 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS26 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS27 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS28 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS29 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS31 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS32 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS33 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS34 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS36 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS37 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS38 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS39 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS40 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS41 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS43 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS44 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS45 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS46 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS47 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS48 Pf var gene cDNA (Trophozoite),Ugandan isolate UKM19 Pf Ring stage var gene cDNA,Ugandan isolate UKM19 Pf Trophozoite stage var gene cDNA,Ugandan isolate UKM64 Pf Ring stage var gene cDNA,Ugandan isolate UKM64 Pf Trophozoite stage var gene cDNA,Ugandan isolate UKS1 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS10 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS12 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS13 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS14 Pf Ring stage var gene cDNA,Ugandan isolate UKS14 Pf Trophozoite stage var gene cDNA,Ugandan isolate UKS14 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS15 Pf Ring stage var gene cDNA,Ugandan isolate UKS15 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS17 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS2 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS25 Pf Ring stage var gene cDNA,Ugandan isolate UKS25 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS3 Pf Ring stage var gene cDNA,Ugandan isolate UKS3 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS4 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS47 Pf Ring stage var gene cDNA,Ugandan isolate UKS47 Pf Trophozoite stage var gene cDNA,Ugandan isolate UKS5 Pf Ring stage var gene cDNA,Ugandan isolate UKS5 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS7 Pf Ring stage var gene cDNA,Ugandan isolate UKS7 Pf Trophozoite stage var gene cDNA,Ugandan isolate UKS7 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS9 Pf var gene cDNA (Trophozoite),VARPB11A ( ),VARPB11B ( ),VARPB13A ( ),VARPB13C ( ),VARPB13D ( ),VARPB13G ( ),VARPB13H ( ),VARPB14A ( ),VARPB14B ( ),VARPB14C ( ),VARPB14D ( ),VARPB15A ( ),VARPB15C ( ),VARPB15E ( ),VARPB16A ( ),VARPB16G ( ),VARPB17A ( ),VARPB17D ( ),VARPB17G ( ),VARPB18A ( ),VARPB18C ( ),VARPB18F ( ),VARPB18H ( ),VARPB19B ( ),VARPB19D ( ),VARPB19H ( ),VARPB1C ( ),VARPB1D ( ),VARPB1E ( ),VARPB1F ( ),VARPB1G ( ),VARPB1H ( ),VARPB20B ( ),VARPB20D ( ),VARPB20F ( ),VARPB20G ( ),VARPB21A ( ),VARPB21B ( ),VARPB21E ( ),VARPB21G ( ),VARPB21H ( ),VARPB22A ( ),VARPB22B ( ),VARPB22C ( ),VARPB22D ( ),VARPB22E ( ),VARPB22F ( ),VARPB22G ( ),VARPB22H ( ),VARPB23B ( ),VARPB23D ( ),VARPB23E ( ),VARPB23F ( ),VARPB23G ( ),VARPB23H ( ),VARPB24A ( ),VARPB24B ( ),VARPB24C ( ),VARPB24D ( ),VARPB24E ( ),VARPB24G ( ),VARPB24H ( ),VARPB25A ( ),VARPB25B ( ),VARPB25C ( ),VARPB25E ( ),VARPB25F ( ),VARPB25G ( ),VARPB26B ( ),VARPB26D ( ),VARPB26E ( ),VARPB26F ( ),VARPB26G ( ),VARPB26H ( ),VARPB27A ( ),VARPB27B ( ),VARPB27C ( ),VARPB27D ( ),VARPB27E ( ),VARPB27F ( ),VARPB27G ( ),VARPB27H ( ),VARPB28A ( ),VARPB28B ( ),VARPB28C ( ),VARPB28E ( ),VARPB28F ( ),VARPB28G ( ),VARPB29A ( ),VARPB29B ( ),VARPB29C ( ),VARPB29E ( ),VARPB29F ( ),VARPB29G ( ),VARPB29H ( ),VARPB2A ( ),VARPB2D ( ),VARPB2E ( ),VARPB2F ( ),VARPB30A ( ),VARPB31A ( ),VARPB31B ( ),VARPB31D ( ),VARPB31F ( ),VARPB31G ( ),VARPB31H ( ),VARPB32C ( ),VARPB32F ( ),VARPB34A ( ),VARPB34E ( ),VARPB34F ( ),VARPB34H ( ),VARPB35D ( ),VARPB35F ( ),VARPB35G ( ),VARPB35H ( ),VARPB36C ( ),VARPB36D ( ),VARPB36H ( ),VARPB39B ( ),VARPB39C ( ),VARPB39D ( ),VARPB39E ( ),VARPB39G ( ),VARPB39H ( ),VARPB3A ( ),VARPB3B ( ),VARPB3C ( ),VARPB3D ( ),VARPB3E ( ),VARPB3F ( ),VARPB3G ( ),VARPB3H ( ),VARPB40A ( ),VARPB40D ( ),VARPB40E ( ),VARPB40F ( ),VARPB40G ( ),VARPB40H ( ),VARPB41F ( ),VARPB42B ( ),VARPB42C ( ),VARPB42D ( ),VARPB42F ( ),VARPB42G ( ),VARPB42H ( ),VARPB43B ( ),VARPB43C ( ),VARPB43D ( ),VARPB43E ( ),VARPB43F ( ),VARPB43G ( ),VARPB43H ( ),VARPB47E ( ),VARPB47F ( ),VARPB47G ( ),VARPB48A ( ),VARPB48B ( ),VARPB48C ( ),VARPB48D ( ),VARPB48E ( ),VARPB48G ( ),VARPB48H ( ),VARPB49F ( ),VARPB49H ( ),VARPB4A ( ),VARPB4B ( ),VARPB4C ( ),VARPB4D ( ),VARPB4E ( ),VARPB4F ( ),VARPB4G ( ),VARPB4H ( ),VARPB50E ( ),VARPB50F ( ),VARPB50G ( ),VARPB50H ( ),VARPB51A ( ),VARPB51B ( ),VARPB51F ( ),VARPB51G ( ),VARPB51H ( ),VARPB53A ( ),VARPB53B ( ),VARPB53C ( ),VARPB53D ( ),VARPB53E ( ),VARPB53F ( ),VARPB53G ( ),VARPB53H ( ),VARPB54A ( ),VARPB54B ( ),VARPB54C ( ),VARPB54D ( ),VARPB54E ( ),VARPB54F ( ),VARPB54G ( ),VARPB54H ( ),VARPB55A ( ),VARPB55B ( ),VARPB55C ( ),VARPB55D ( ),VARPB55F ( ),VARPB55G ( ),VARPB55H ( ),VARPB56A ( ),VARPB56B ( ),VARPB56C ( ),VARPB56D ( ),VARPB56E ( ),VARPB56F ( ),VARPB56G ( ),VARPB56H ( ),VARPB57A ( ),VARPB57B ( ),VARPB57C ( ),VARPB58A ( ),VARPB58B ( ),VARPB58C ( ),VARPB58D ( ),VARPB58E ( ),VARPB58F ( ),VARPB58G ( ),VARPB58H ( ),VARPB59A ( ),VARPB59B ( ),VARPB59C ( ),VARPB59D ( ),VARPB59E ( ),VARPB59F ( ),VARPB59G ( ),VARPB59H ( ),VARPB5A ( ),VARPB5B ( ),VARPB5C ( ),VARPB5D ( ),VARPB5E ( ),VARPB5F ( ),VARPB5G ( ),VARPB5H ( ),VARPB60A ( ),VARPB60B ( ),VARPB60C ( ),VARPB6A ( ),VARPB6B ( ),VARPB6C ( ),VARPB6D ( ),VARPB6E ( ),VARPB6F ( ),VARPB6G ( ),VARPB6H ( ),VARPB7A ( ),VARPB7B ( ),VARPB7C ( ),VARPB7D ( ),VARPB7E ( ),VARPB7F ( ),VARPB7G ( ),VARPB7H ( ),VARPB8A ( ),VARPB8B ( ),VARPB8C ( ),VARPB8D ( ),VARPB8F ( ),VARPB8G ( ),VARPB8H ( ),VARPB9A ( ),VARPB9B ( ),VARPB9C ( ),VARPB9H ( ),WatanabePf3D7_cultured,WatanabePv,WatanabePy17XL,XPB Sugano cDNA library (erythrocytic stage),XPF Sugano cDNA library (erythrocytic stage),XPV Sugano cDNA library (erythrocytic stage),XPYs Sugano cDNA library (erythrocytic stage),XPYw Sugano cDNA library (erythrocytic stage),Zhang/Gardner Pf 3D7 mixed asexual (Asexual stage),cbsPfHB3.1; Debopam Chakrabarti,czapPFDd2.1; Debopam Chakrabarti,ookinete library (12 h; 18h and 24 h after in vitro culture),Nc 1314 Tachyzoite cDNA,Nc-1 Tachyzoite cDNA Library,Nc-1 Tachyzoite cDNA Library 2,Nc-1 pZ Tachyzoite cDNA Library,Nc-1Tachyzoite cDNA,Nc-LIV Tachyzoite cDNA Library,Neospora caninum,Neospora caninum Lambda Zap cDNA library,RH tachyzoite cDNA library,Tg CAST Tachyzoite cDNA Library,Tg CAST Tachyzoite cDNA Library 2,Tg COUG Tachyzoite cDNA Library,TgMAS Tachyzoite cDNA Library,TgME49 3 day invitro bradyzoite,TgME49 B7 Tachyzoite cDNA Library 1,TgME49 B7 Tachyzoite cDNA Library 2,TgME49 Tachyzoite cDNA,TgME49 invivo Bradyzoite cDNA (in vitro Bradyzoite; 6day),TgME49 invivo Bradyzoite cDNA size selected,TgME49cDNA (in vitro Bradyzoite; 6day),TgRH Tachyzoite FL cDNA,TgRH Tachyzoite Norm 1 cDNA Library,TgRH Tachyzoite Norm 5 cDNA Library,TgRH Tachyzoite Norm 7 cDNA Library,TgRH Tachyzoite Subtracted cDNA Library,TgRH Tachyzoite cDNA,TgRH*-Tachyzoite cDNA,TgRHcDNA,TgVEG Fully sporulated oocyst cDNA (Fully sporulated oocysts),TgVEG Partially sporulated oocyst cDNA (Partially sporulated oocysts),TgVEG-Tachyzoite cDNA,TgVEG118 Tachyzoite cDNA Library,TgVEG118 Tachyzoite cDNA Library-2,TgZAP-cDNA1 (tachyzoite),Toxoplasma gondii,Toxoplasma gondii Bradyzoite Library (Bradyzoite developmental stage),Toxoplasma gondii Tachyzoite Library (Tachyzoite developmental stage),Toxoplasma gondii encystation; subtracted cDNA,Toxoplasma gondii mRNA (T.Koyama),WatanabeTgRH (tachyzoites),differentially expressed gene in tachyzoite stage of Neospora caninum Korea isolate Nc-Kr2 (Tachy...,Cold-induced pseudocyst (TvCS) (Pseudocyst stage),Cot1000 normalized T1 cDNA library,Cot6 normalized T1 cDNA library,Fibronectin-mediated cytoadherence (TvFN) (Amoeboid stage),G2/M trophozoite (TvG2M) (G1/S phase),HMW C1 cDNA library,Low glucose culture (TvLG),Low iron culture (TvLI),Normal unsynchronized culture (TvEST) (Unsynchronized culture),Trichomonas vaginalis,VEC-mediated cytoadherence (TvVEC) (Amoeboid stage),non-normalized T1 cDNA library,Bloodstream form of serodeme ILTat1.1,Differentially expressed Trypanosoma brucei mRNAs,Leishmania braziliensis,Leishmania braziliensis amastigote stage; 72 hours post infection,Leishmania braziliensis procyclic stage; logarithmic growth phase,Leishmania infantum,Leishmania major,Leishmania major Amastigote Lambda Zap II library,Leishmania major Amastigote full length cDNA library,Leishmania major promastigote full length cDNA library from early logarithmic stage (day 3),Leishmania major promastigote full length cDNA library from logarithmic stage (day 7),Leishmania major promastigote full length cDNA library from stationary stage (day 10),Leishmania mexicana,LmLV39cDNA,MVAT4 bloodstream form of serodeme WRATat1.1,Random insertions of transposon MosHYG in Leishmania major (promastigote),SM-Lib-Tc Tehuantepec 17LER,SM-Lib-Tc Tehuantepec 17WTS,SM-Lib-Tc Y BZR,Stage-specific mRNA,T. Cruzi epimastigote normalised cDNA Library,T. cruzi epimastigote normalised cDNA Library,T. cruzi epimastigote normalized cDNA Library,T.cruzi epimastigote non-normalized cDNA Library,T.cruzi epimastigote normalized cDNA Library,TcAM (amastigote-like),TcT-E (trypomastigote),TcTR (trypomastigote),Trypanosoma brucei,Trypanosoma brucei rhodesiense ZAP II library (Insect form),Trypanosoma brucei strain 927 ESTs,Trypanosoma congolense,Trypanosoma congolense isolate IL300 bloodstream stage,Trypanosoma congolense isolate IL300 epimastigote stage,Trypanosoma congolense isolate IL300 metacyclic stage,Trypanosoma congolense isolate IL300 normalised bloodstream stage,Trypanosoma congolense isolate IL300 normalised metacyclic stage,Trypanosoma congolense isolate IL300 procyclic stage,Trypanosoma cruzi,Trypanosoma cruzi CL Brener epimastigote,Trypanosoma cruzi Y (Tomoo Tanaka),Trypanosoma cruzi amastigote cDNA library,Trypanosoma cruzi differential display cDNA library,page (promastigote),sucrose-gradient-F23 (promastigote),sucrose-gradient-F25 (promastigote)', `o-fields` = 'NULL', `o-tables` = 'NULL', ..., .url = if(.json) 'http://eupathdb.org/eupathdb/webservices/EstQuestions/EstsByLibrary.json' else 'http://eupathdb.org/eupathdb/webservices/EstQuestions/EstsByLibrary.xml', .convert = NULL, .json = TRUE
)
{
`libraryId` <- checkValues(`libraryId`, "`EstsByLibrary.libraryId.options`", 'libraryId', TRUE)
if(!missing(`o-fields`)) `o-fields` <- checkValues(`o-fields`, c("all", "none", "primary_key", "organism", "length", "dbest_name",
"assembly_source_id", "vector", "stage", "organism_text", "ncbi_tax_id",
"sequence", "wdk_weight"), 'o-fields', TRUE)
if(!missing(`o-tables`)) `o-tables` <- checkValues(`o-tables`, c("all", "none"), 'o-tables', TRUE)
params = list(
'libraryId' = `libraryId`
)
if(!missing(`o-fields`))
params[['o-fields']] = `o-fields`
if(!missing(`o-tables`))
params[['o-tables']] = `o-tables`
ans = getForm(.url, .params = params, ...)
if(is.null(.convert) && .json) return(fromJSON(ans))
if(!is.null(.convert))
.convert(ans)
else if(!is.null(type <- attr(ans, 'Content-Type')) && type == 'text/json')
convertJSON(ans)
else
ans
}
`EstsByLibrary.libraryId.options` =
c("E. histolytica Normalized cDNA library", "Entamoeba cDNA clone 6 (trophozoite)",
"Entamoeba cDNA to mRNA (trophozoite)", "Entamoeba dispar", "Entamoeba dispar cDNAs (trophozoite)",
"Entamoeba histolytica", "Entamoeba histolytica HM-1:IMSS", "Entamoeba histolytica HM-1:IMSS mRNA (Tomoo Tanaka) (trophozoite)",
"Entamoeba histolytica YS-27", "Entamoeba histolytica trophozoite",
"C. parvum KSU-1 normalized sporozoite", "Cryptosporidium muris",
"Cryptosporidium muris (strain RN66) cDNA library; stage oocyst",
"Cryptosporidium parvum", "Pooled Cryptosporidium parvum KSU-1 enriched 24-48hr post-infection; in-vitro non-normalized nano...",
"WatanabeCpHNJ-1 (oocyst)", "XCP Sugano cDNA library (sporozoite stage)",
"pSKIIminusCpIOWAsporoLib2 (sporozoite)", "uniZAPCpIOWAsporoLib1 (sporozoite)",
"uniZAPCpIOWAsporoLib3 (sporozoite)", "Giardia Assemblage", "Giardia lamblia trophozoite (Trophozoite)",
"trophozoite cDNA", "Encephalitozoon cuniculi", "RACE-PCR products from Encephalitozoon cuniculi (Dormant spores)",
"Blood stage Plasmodium falciparum cDNA library PFExtensions",
"Blood stage Plasmodium falciparum cDNA library PfBamH1", "Blood stage Plasmodium falciparum cDNA library PfSau3a",
"Blood stage Plasmodium falciparum cDNA library PfSuOrig", "Field isolate cDNA library",
"GenoScope Schizont enriched", "In vitro adapted parasite UAM52b Pf Ring stage var gene cDNA",
"In vitro adapted parasite UAM52b Pf Trophozoite stage var gene cDNA",
"In vitro adapted parasite UAS22b Pf Ring stage var gene cDNA",
"In vitro adapted parasite UAS22b Pf Trophozoite stage var gene cDNA",
"In vitro adapted parasite UAS29b Pf Ring stage var gene cDNA",
"In vitro adapted parasite UAS29b Pf Trophozoite stage var gene cDNA",
"In vitro adapted parasite UAS31b Pf Ring stage var gene cDNA",
"In vitro adapted parasite UAS31b Pf Trophozoite stage var gene cDNA",
"In vitro adapted parasite UAS41b Pf Ring stage var gene cDNA",
"In vitro adapted parasite UAS41b Pf Trophozoite stage var gene cDNA",
"Laboratory isolate 3D7AH1 Pf Ring stage var gene cDNA", "Laboratory isolate 3D7AH1 Pf Trophozoite stage var gene cDNA",
"Laboratory isolate 3D7AH1S.2 Pf Ring stage var gene cDNA", "Laboratory isolate 3D7AH1S.2 Pf Trophozoite stage var gene cDNA",
"Laboratory isolate 7G8 Pf Ring stage var gene cDNA", "Laboratory isolate 7G8 Pf Trophozoite stage var gene cDNA",
"Laboratory isolate DD2 Pf Ring stage var gene cDNA", "Laboratory isolate DD2 Pf Trophozoite stage var gene cDNA",
"Laboratory isolate FCR3 Pf Ring stage var gene cDNA", "Laboratory isolate FCR3 Pf Trophozoite stage var gene cDNA",
"Laboratory isolate FCR3s1.6 Pf Ring stage var gene cDNA", "Laboratory isolate FCR3s1.6 Pf Trophozoite stage var gene cDNA",
"Laboratory isolate TM284 Pf Ring stage var gene cDNA", "Laboratory isolate TM284 Pf Trophozoite stage var gene cDNA",
"Pb cDNA #17; Tommaso Pace; Marta Ponzi; and Clara Frontali (asynchronous blood stage)",
"Pb cDNA #20; Charles Yowell and Jane Carlton (asynchronous blood stage)",
"Pb sgSpz/ooSpz subtraction library", "Plasmodium berghei", "Plasmodium berghei NK65 salivary gland sporozoite",
"Plasmodium berghei cDNA library", "Plasmodium berghei erythrocytic schizont",
"Plasmodium berghei liver stage parasite", "Plasmodium berghei midgut sporozoite",
"Plasmodium berghei ookinete", "Plasmodium berghei ookinete stage",
"Plasmodium berghei salivary grand sporozoite (salivary gland sporozoite)",
"Plasmodium berghei strain ANKA erythrocytic stage", "Plasmodium falciparum",
"Plasmodium falciparum 3D7 asexual cDNA", "Plasmodium falciparum 3D7 gametocyte cDNA library (gametocyte (stage III-V))",
"Plasmodium falciparum FCB1 schizont", "Plasmodium falciparum FcB1 schizont",
"Plasmodium falciparum NF54 (D.A.Fidock) (asynchronous asexual blood stage)",
"Plasmodium falciparum cDNA pUC8 Express Library (late erythrocytic-stage parasite mRNA)",
"Plasmodium vivax", "Plasmodium yoelii", "Plasmodium yoelii liver stage LCM cDNA library (40 hour liver schizont)",
"Plasmodium yoelii sporozoite cDNA (sporozoites from salivary gland)",
"Plasmodium yoelii yoelii from Anopheles stephensi midgut (oocyst)",
"Plasmodium yoelli 17X axenic hepatic stages", "PvBEcDNA (Assexual Blood Stages)",
"PyBS (Asexual blood stages)", "SSH library of Plasmodium berghei strain K173 (erythrocytic stage)",
"SSH library of Plasmodium berghei strain RQ (erythrocytic stage)",
"Sugano Malaria cDNA library (erythrocytic stage)", "Ugandan isolate UAM05 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM08 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM09 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM11 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM12 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM13 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM14 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM15 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM16 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM17 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM18 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM20 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM21 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM22 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM23 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM25 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM26 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM27 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM28 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM29 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM31 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM32 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM33 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM34 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM35 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM36 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM37 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM38 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM39 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM40 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM41 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM42 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM43 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM44 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM45 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM46 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM47 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM48 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM49 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM50 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM51 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM52 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM53 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS03 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS06 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS07 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS08 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS10 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS11 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS12 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS13 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS14 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS16 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS17 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS18 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS19 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS20 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS21 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS22 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS23 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS24 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS25 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS26 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS27 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS28 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS29 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS31 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS32 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS33 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS34 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS36 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS37 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS38 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS39 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS40 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS41 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS43 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS44 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS45 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS46 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS47 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS48 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKM19 Pf Ring stage var gene cDNA",
"Ugandan isolate UKM19 Pf Trophozoite stage var gene cDNA", "Ugandan isolate UKM64 Pf Ring stage var gene cDNA",
"Ugandan isolate UKM64 Pf Trophozoite stage var gene cDNA", "Ugandan isolate UKS1 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS10 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKS12 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS13 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKS14 Pf Ring stage var gene cDNA",
"Ugandan isolate UKS14 Pf Trophozoite stage var gene cDNA", "Ugandan isolate UKS14 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS15 Pf Ring stage var gene cDNA", "Ugandan isolate UKS15 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS17 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKS2 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS25 Pf Ring stage var gene cDNA", "Ugandan isolate UKS25 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS3 Pf Ring stage var gene cDNA", "Ugandan isolate UKS3 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS4 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKS47 Pf Ring stage var gene cDNA",
"Ugandan isolate UKS47 Pf Trophozoite stage var gene cDNA", "Ugandan isolate UKS5 Pf Ring stage var gene cDNA",
"Ugandan isolate UKS5 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKS7 Pf Ring stage var gene cDNA",
"Ugandan isolate UKS7 Pf Trophozoite stage var gene cDNA", "Ugandan isolate UKS7 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS9 Pf var gene cDNA (Trophozoite)", "VARPB11A ( )",
"VARPB11B ( )", "VARPB13A ( )", "VARPB13C ( )", "VARPB13D ( )",
"VARPB13G ( )", "VARPB13H ( )", "VARPB14A ( )", "VARPB14B ( )",
"VARPB14C ( )", "VARPB14D ( )", "VARPB15A ( )", "VARPB15C ( )",
"VARPB15E ( )", "VARPB16A ( )", "VARPB16G ( )", "VARPB17A ( )",
"VARPB17D ( )", "VARPB17G ( )", "VARPB18A ( )", "VARPB18C ( )",
"VARPB18F ( )", "VARPB18H ( )", "VARPB19B ( )", "VARPB19D ( )",
"VARPB19H ( )", "VARPB1C ( )", "VARPB1D ( )", "VARPB1E ( )",
"VARPB1F ( )", "VARPB1G ( )", "VARPB1H ( )", "VARPB20B ( )",
"VARPB20D ( )", "VARPB20F ( )", "VARPB20G ( )", "VARPB21A ( )",
"VARPB21B ( )", "VARPB21E ( )", "VARPB21G ( )", "VARPB21H ( )",
"VARPB22A ( )", "VARPB22B ( )", "VARPB22C ( )", "VARPB22D ( )",
"VARPB22E ( )", "VARPB22F ( )", "VARPB22G ( )", "VARPB22H ( )",
"VARPB23B ( )", "VARPB23D ( )", "VARPB23E ( )", "VARPB23F ( )",
"VARPB23G ( )", "VARPB23H ( )", "VARPB24A ( )", "VARPB24B ( )",
"VARPB24C ( )", "VARPB24D ( )", "VARPB24E ( )", "VARPB24G ( )",
"VARPB24H ( )", "VARPB25A ( )", "VARPB25B ( )", "VARPB25C ( )",
"VARPB25E ( )", "VARPB25F ( )", "VARPB25G ( )", "VARPB26B ( )",
"VARPB26D ( )", "VARPB26E ( )", "VARPB26F ( )", "VARPB26G ( )",
"VARPB26H ( )", "VARPB27A ( )", "VARPB27B ( )", "VARPB27C ( )",
"VARPB27D ( )", "VARPB27E ( )", "VARPB27F ( )", "VARPB27G ( )",
"VARPB27H ( )", "VARPB28A ( )", "VARPB28B ( )", "VARPB28C ( )",
"VARPB28E ( )", "VARPB28F ( )", "VARPB28G ( )", "VARPB29A ( )",
"VARPB29B ( )", "VARPB29C ( )", "VARPB29E ( )", "VARPB29F ( )",
"VARPB29G ( )", "VARPB29H ( )", "VARPB2A ( )", "VARPB2D ( )",
"VARPB2E ( )", "VARPB2F ( )", "VARPB30A ( )", "VARPB31A ( )",
"VARPB31B ( )", "VARPB31D ( )", "VARPB31F ( )", "VARPB31G ( )",
"VARPB31H ( )", "VARPB32C ( )", "VARPB32F ( )", "VARPB34A ( )",
"VARPB34E ( )", "VARPB34F ( )", "VARPB34H ( )", "VARPB35D ( )",
"VARPB35F ( )", "VARPB35G ( )", "VARPB35H ( )", "VARPB36C ( )",
"VARPB36D ( )", "VARPB36H ( )", "VARPB39B ( )", "VARPB39C ( )",
"VARPB39D ( )", "VARPB39E ( )", "VARPB39G ( )", "VARPB39H ( )",
"VARPB3A ( )", "VARPB3B ( )", "VARPB3C ( )", "VARPB3D ( )", "VARPB3E ( )",
"VARPB3F ( )", "VARPB3G ( )", "VARPB3H ( )", "VARPB40A ( )",
"VARPB40D ( )", "VARPB40E ( )", "VARPB40F ( )", "VARPB40G ( )",
"VARPB40H ( )", "VARPB41F ( )", "VARPB42B ( )", "VARPB42C ( )",
"VARPB42D ( )", "VARPB42F ( )", "VARPB42G ( )", "VARPB42H ( )",
"VARPB43B ( )", "VARPB43C ( )", "VARPB43D ( )", "VARPB43E ( )",
"VARPB43F ( )", "VARPB43G ( )", "VARPB43H ( )", "VARPB47E ( )",
"VARPB47F ( )", "VARPB47G ( )", "VARPB48A ( )", "VARPB48B ( )",
"VARPB48C ( )", "VARPB48D ( )", "VARPB48E ( )", "VARPB48G ( )",
"VARPB48H ( )", "VARPB49F ( )", "VARPB49H ( )", "VARPB4A ( )",
"VARPB4B ( )", "VARPB4C ( )", "VARPB4D ( )", "VARPB4E ( )", "VARPB4F ( )",
"VARPB4G ( )", "VARPB4H ( )", "VARPB50E ( )", "VARPB50F ( )",
"VARPB50G ( )", "VARPB50H ( )", "VARPB51A ( )", "VARPB51B ( )",
"VARPB51F ( )", "VARPB51G ( )", "VARPB51H ( )", "VARPB53A ( )",
"VARPB53B ( )", "VARPB53C ( )", "VARPB53D ( )", "VARPB53E ( )",
"VARPB53F ( )", "VARPB53G ( )", "VARPB53H ( )", "VARPB54A ( )",
"VARPB54B ( )", "VARPB54C ( )", "VARPB54D ( )", "VARPB54E ( )",
"VARPB54F ( )", "VARPB54G ( )", "VARPB54H ( )", "VARPB55A ( )",
"VARPB55B ( )", "VARPB55C ( )", "VARPB55D ( )", "VARPB55F ( )",
"VARPB55G ( )", "VARPB55H ( )", "VARPB56A ( )", "VARPB56B ( )",
"VARPB56C ( )", "VARPB56D ( )", "VARPB56E ( )", "VARPB56F ( )",
"VARPB56G ( )", "VARPB56H ( )", "VARPB57A ( )", "VARPB57B ( )",
"VARPB57C ( )", "VARPB58A ( )", "VARPB58B ( )", "VARPB58C ( )",
"VARPB58D ( )", "VARPB58E ( )", "VARPB58F ( )", "VARPB58G ( )",
"VARPB58H ( )", "VARPB59A ( )", "VARPB59B ( )", "VARPB59C ( )",
"VARPB59D ( )", "VARPB59E ( )", "VARPB59F ( )", "VARPB59G ( )",
"VARPB59H ( )", "VARPB5A ( )", "VARPB5B ( )", "VARPB5C ( )",
"VARPB5D ( )", "VARPB5E ( )", "VARPB5F ( )", "VARPB5G ( )", "VARPB5H ( )",
"VARPB60A ( )", "VARPB60B ( )", "VARPB60C ( )", "VARPB6A ( )",
"VARPB6B ( )", "VARPB6C ( )", "VARPB6D ( )", "VARPB6E ( )", "VARPB6F ( )",
"VARPB6G ( )", "VARPB6H ( )", "VARPB7A ( )", "VARPB7B ( )", "VARPB7C ( )",
"VARPB7D ( )", "VARPB7E ( )", "VARPB7F ( )", "VARPB7G ( )", "VARPB7H ( )",
"VARPB8A ( )", "VARPB8B ( )", "VARPB8C ( )", "VARPB8D ( )", "VARPB8F ( )",
"VARPB8G ( )", "VARPB8H ( )", "VARPB9A ( )", "VARPB9B ( )", "VARPB9C ( )",
"VARPB9H ( )", "WatanabePf3D7_cultured", "WatanabePv", "WatanabePy17XL",
"XPB Sugano cDNA library (erythrocytic stage)", "XPF Sugano cDNA library (erythrocytic stage)",
"XPV Sugano cDNA library (erythrocytic stage)", "XPYs Sugano cDNA library (erythrocytic stage)",
"XPYw Sugano cDNA library (erythrocytic stage)", "Zhang/Gardner Pf 3D7 mixed asexual (Asexual stage)",
"cbsPfHB3.1; Debopam Chakrabarti", "czapPFDd2.1; Debopam Chakrabarti",
"ookinete library (12 h; 18h and 24 h after in vitro culture)",
"Nc 1314 Tachyzoite cDNA", "Nc-1 Tachyzoite cDNA Library", "Nc-1 Tachyzoite cDNA Library 2",
"Nc-1 pZ Tachyzoite cDNA Library", "Nc-1Tachyzoite cDNA", "Nc-LIV Tachyzoite cDNA Library",
"Neospora caninum", "Neospora caninum Lambda Zap cDNA library",
"RH tachyzoite cDNA library", "Tg CAST Tachyzoite cDNA Library",
"Tg CAST Tachyzoite cDNA Library 2", "Tg COUG Tachyzoite cDNA Library",
"TgMAS Tachyzoite cDNA Library", "TgME49 3 day invitro bradyzoite",
"TgME49 B7 Tachyzoite cDNA Library 1", "TgME49 B7 Tachyzoite cDNA Library 2",
"TgME49 Tachyzoite cDNA", "TgME49 invivo Bradyzoite cDNA (in vitro Bradyzoite; 6day)",
"TgME49 invivo Bradyzoite cDNA size selected", "TgME49cDNA (in vitro Bradyzoite; 6day)",
"TgRH Tachyzoite FL cDNA", "TgRH Tachyzoite Norm 1 cDNA Library",
"TgRH Tachyzoite Norm 5 cDNA Library", "TgRH Tachyzoite Norm 7 cDNA Library",
"TgRH Tachyzoite Subtracted cDNA Library", "TgRH Tachyzoite cDNA",
"TgRH*-Tachyzoite cDNA", "TgRHcDNA", "TgVEG Fully sporulated oocyst cDNA (Fully sporulated oocysts)",
"TgVEG Partially sporulated oocyst cDNA (Partially sporulated oocysts)",
"TgVEG-Tachyzoite cDNA", "TgVEG118 Tachyzoite cDNA Library",
"TgVEG118 Tachyzoite cDNA Library-2", "TgZAP-cDNA1 (tachyzoite)",
"Toxoplasma gondii", "Toxoplasma gondii Bradyzoite Library (Bradyzoite developmental stage)",
"Toxoplasma gondii Tachyzoite Library (Tachyzoite developmental stage)",
"Toxoplasma gondii encystation; subtracted cDNA", "Toxoplasma gondii mRNA (T.Koyama)",
"WatanabeTgRH (tachyzoites)", "differentially expressed gene in tachyzoite stage of Neospora caninum Korea isolate Nc-Kr2 (Tachy...",
"Cold-induced pseudocyst (TvCS) (Pseudocyst stage)", "Cot1000 normalized T1 cDNA library",
"Cot6 normalized T1 cDNA library", "Fibronectin-mediated cytoadherence (TvFN) (Amoeboid stage)",
"G2/M trophozoite (TvG2M) (G1/S phase)", "HMW C1 cDNA library",
"Low glucose culture (TvLG)", "Low iron culture (TvLI)", "Normal unsynchronized culture (TvEST) (Unsynchronized culture)",
"Trichomonas vaginalis", "VEC-mediated cytoadherence (TvVEC) (Amoeboid stage)",
"non-normalized T1 cDNA library", "Bloodstream form of serodeme ILTat1.1",
"Differentially expressed Trypanosoma brucei mRNAs", "Leishmania braziliensis",
"Leishmania braziliensis amastigote stage; 72 hours post infection",
"Leishmania braziliensis procyclic stage; logarithmic growth phase",
"Leishmania infantum", "Leishmania major", "Leishmania major Amastigote Lambda Zap II library",
"Leishmania major Amastigote full length cDNA library", "Leishmania major promastigote full length cDNA library from early logarithmic stage (day 3)",
"Leishmania major promastigote full length cDNA library from logarithmic stage (day 7)",
"Leishmania major promastigote full length cDNA library from stationary stage (day 10)",
"Leishmania mexicana", "LmLV39cDNA", "MVAT4 bloodstream form of serodeme WRATat1.1",
"Random insertions of transposon MosHYG in Leishmania major (promastigote)",
"SM-Lib-Tc Tehuantepec 17LER", "SM-Lib-Tc Tehuantepec 17WTS",
"SM-Lib-Tc Y BZR", "Stage-specific mRNA", "T. Cruzi epimastigote normalised cDNA Library",
"T. cruzi epimastigote normalised cDNA Library", "T. cruzi epimastigote normalized cDNA Library",
"T.cruzi epimastigote non-normalized cDNA Library", "T.cruzi epimastigote normalized cDNA Library",
"TcAM (amastigote-like)", "TcT-E (trypomastigote)", "TcTR (trypomastigote)",
"Trypanosoma brucei", "Trypanosoma brucei rhodesiense ZAP II library (Insect form)",
"Trypanosoma brucei strain 927 ESTs", "Trypanosoma congolense",
"Trypanosoma congolense isolate IL300 bloodstream stage", "Trypanosoma congolense isolate IL300 epimastigote stage",
"Trypanosoma congolense isolate IL300 metacyclic stage", "Trypanosoma congolense isolate IL300 normalised bloodstream stage",
"Trypanosoma congolense isolate IL300 normalised metacyclic stage",
"Trypanosoma congolense isolate IL300 procyclic stage", "Trypanosoma cruzi",
"Trypanosoma cruzi CL Brener epimastigote", "Trypanosoma cruzi Y (Tomoo Tanaka)",
"Trypanosoma cruzi amastigote cDNA library", "Trypanosoma cruzi differential display cDNA library",
"page (promastigote)", "sucrose-gradient-F23 (promastigote)",
"sucrose-gradient-F25 (promastigote)")
EstsWithGeneOverlap =
function(
`libraryIdGenes` = 'Entamoeba dispar,Entamoeba histolytica trophozoite,E. histolytica Normalized cDNA library,Entamoeba cDNA clone 6 (trophozoite),Entamoeba histolytica HM-1:IMSS,Entamoeba cDNA to mRNA (trophozoite),Entamoeba histolytica YS-27,Entamoeba histolytica,Entamoeba dispar cDNAs (trophozoite),Entamoeba histolytica HM-1:IMSS mRNA (Tomoo Tanaka) (trophozoite),WatanabeCpHNJ-1 (oocyst),Cryptosporidium muris,XCP Sugano cDNA library (sporozoite stage),uniZAPCpIOWAsporoLib3 (sporozoite),Cryptosporidium muris (strain RN66) cDNA library; stage oocyst,pSKIIminusCpIOWAsporoLib2 (sporozoite),C. parvum KSU-1 normalized sporozoite,Pooled Cryptosporidium parvum KSU-1 enriched 24-48hr post-infection; in-vitro non-normalized nano...,Cryptosporidium parvum,uniZAPCpIOWAsporoLib1 (sporozoite),Giardia lamblia trophozoite (Trophozoite),Giardia Assemblage A isolate WB,trophozoite cDNA,Encephalitozoon cuniculi,RACE-PCR products from Encephalitozoon cuniculi (Dormant spores),Laboratory isolate 3D7AH1 Pf Trophozoite stage var gene cDNA,VARPB11A ( ),VARPB13G ( ),VARPB18H ( ),VARPB19D ( ),VARPB27A ( ),Ugandan isolate UKS2 Pf var gene cDNA (Trophozoite),VARPB15E ( ),VARPB27B ( ),VARPB56F ( ),VARPB53G ( ),VARPB59D ( ),Laboratory isolate 7G8 Pf Ring stage var gene cDNA,VARPB19H ( ),Laboratory isolate FCR3s1.6 Pf Ring stage var gene cDNA,SSH library of Plasmodium berghei strain RQ (erythrocytic stage),VARPB56C ( ),Ugandan isolate UAS40 Pf var gene cDNA (Trophozoite),VARPB42F ( ),VARPB14A ( ),VARPB1D ( ),VARPB23F ( ),Ugandan isolate UAS22 Pf var gene cDNA (Trophozoite),VARPB16G ( ),VARPB3G ( ),VARPB57B ( ),VARPB32C ( ),VARPB18A ( ),VARPB4F ( ),VARPB54C ( ),Ugandan isolate UAM50 Pf var gene cDNA (Trophozoite),VARPB59A ( ),Blood stage Plasmodium falciparum cDNA library PFExtensions,VARPB34F ( ),VARPB26E ( ),VARPB5F ( ),Ugandan isolate UAS24 Pf var gene cDNA (Trophozoite),VARPB29B ( ),VARPB50G ( ),Laboratory isolate FCR3 Pf Trophozoite stage var gene cDNA,Ugandan isolate UAS06 Pf var gene cDNA (Trophozoite),VARPB55D ( ),In vitro adapted parasite UAS31b Pf Trophozoite stage var gene cDNA,Ugandan isolate UAM16 Pf var gene cDNA (Trophozoite),VARPB1H ( ),VARPB28A ( ),VARPB40H ( ),Ugandan isolate UKM64 Pf Ring stage var gene cDNA,VARPB9A ( ),Plasmodium berghei NK65 salivary gland sporozoite,WatanabePv,VARPB51A ( ),Laboratory isolate DD2 Pf Trophozoite stage var gene cDNA,Plasmodium berghei ookinete stage,VARPB22E ( ),VARPB8D ( ),XPF Sugano cDNA library (erythrocytic stage),VARPB59C ( ),Ugandan isolate UKS4 Pf var gene cDNA (Trophozoite),VARPB3C ( ),VARPB42D ( ),Ugandan isolate UKS47 Pf Ring stage var gene cDNA,VARPB27E ( ),VARPB51F ( ),VARPB21G ( ),Blood stage Plasmodium falciparum cDNA library PfSuOrig,Ugandan isolate UAM32 Pf var gene cDNA (Trophozoite),VARPB31G ( ),VARPB3D ( ),Ugandan isolate UAM25 Pf var gene cDNA (Trophozoite),VARPB58C ( ),VARPB31A ( ),VARPB51H ( ),VARPB6F ( ),VARPB28G ( ),VARPB60B ( ),Blood stage Plasmodium falciparum cDNA library PfBamH1,Laboratory isolate FCR3 Pf Ring stage var gene cDNA,Plasmodium yoelli 17X axenic hepatic stages,Ugandan isolate UAS36 Pf var gene cDNA (Trophozoite),Laboratory isolate 3D7AH1S.2 Pf Trophozoite stage var gene cDNA,Ugandan isolate UAS21 Pf var gene cDNA (Trophozoite),VARPB16A ( ),VARPB23G ( ),Ugandan isolate UAM27 Pf var gene cDNA (Trophozoite),VARPB26G ( ),VARPB29G ( ),Ugandan isolate UAS47 Pf var gene cDNA (Trophozoite),VARPB48B ( ),VARPB55F ( ),XPB Sugano cDNA library (erythrocytic stage),Ugandan isolate UAM39 Pf var gene cDNA (Trophozoite),VARPB48H ( ),Plasmodium falciparum,VARPB35H ( ),VARPB40E ( ),Ugandan isolate UKS12 Pf var gene cDNA (Trophozoite),Ugandan isolate UKM19 Pf Ring stage var gene cDNA,VARPB29C ( ),VARPB29H ( ),VARPB13C ( ),VARPB17D ( ),VARPB24A ( ),VARPB3F ( ),VARPB56H ( ),VARPB17A ( ),VARPB40F ( ),Ugandan isolate UAM49 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS41 Pf var gene cDNA (Trophozoite),VARPB36H ( ),VARPB43H ( ),Ugandan isolate UAS13 Pf var gene cDNA (Trophozoite),Plasmodium berghei liver stage parasite,VARPB58B ( ),Plasmodium berghei,Ugandan isolate UAS12 Pf var gene cDNA (Trophozoite),Ugandan isolate UKM64 Pf Trophozoite stage var gene cDNA,VARPB47G ( ),VARPB26B ( ),In vitro adapted parasite UAS22b Pf Trophozoite stage var gene cDNA,VARPB53C ( ),VARPB32F ( ),VARPB43D ( ),VARPB5B ( ),VARPB25E ( ),VARPB56B ( ),PvBEcDNA (Assexual Blood Stages),Ugandan isolate UAM46 Pf var gene cDNA (Trophozoite),VARPB25B ( ),VARPB57C ( ),VARPB59B ( ),VARPB6A ( ),Laboratory isolate TM284 Pf Trophozoite stage var gene cDNA,Plasmodium falciparum 3D7 asexual cDNA,VARPB24E ( ),Ugandan isolate UAM08 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS39 Pf var gene cDNA (Trophozoite),VARPB1C ( ),VARPB39E ( ),Ugandan isolate UAM47 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM09 Pf var gene cDNA (Trophozoite),VARPB5A ( ),VARPB57A ( ),Ugandan isolate UAM34 Pf var gene cDNA (Trophozoite),VARPB20F ( ),VARPB50F ( ),Plasmodium berghei cDNA library,Ugandan isolate UKS14 Pf Ring stage var gene cDNA,VARPB13H ( ),VARPB4E ( ),VARPB54E ( ),Ugandan isolate UKM19 Pf Trophozoite stage var gene cDNA,VARPB48C ( ),VARPB20D ( ),VARPB3B ( ),VARPB31F ( ),In vitro adapted parasite UAM52b Pf Trophozoite stage var gene cDNA,VARPB48D ( ),VARPB59E ( ),VARPB39B ( ),VARPB39H ( ),VARPB43E ( ),Plasmodium yoelii yoelii from Anopheles stephensi midgut (oocyst),Sugano Malaria cDNA library (erythrocytic stage),Ugandan isolate UAS08 Pf var gene cDNA (Trophozoite),VARPB27F ( ),VARPB55H ( ),VARPB6E ( ),Ugandan isolate UAM12 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM20 Pf var gene cDNA (Trophozoite),VARPB21E ( ),Ugandan isolate UAS20 Pf var gene cDNA (Trophozoite),VARPB7C ( ),Pb cDNA #17; Tommaso Pace; Marta Ponzi; and Clara Frontali (asynchronous blood stage),VARPB53H ( ),Ugandan isolate UAM53 Pf var gene cDNA (Trophozoite),WatanabePy17XL,VARPB54A ( ),XPV Sugano cDNA library (erythrocytic stage),In vitro adapted parasite UAS31b Pf Ring stage var gene cDNA,Ugandan isolate UKS7 Pf Trophozoite stage var gene cDNA,VARPB30A ( ),VARPB51G ( ),In vitro adapted parasite UAS41b Pf Trophozoite stage var gene cDNA,Ugandan isolate UAM23 Pf var gene cDNA (Trophozoite),VARPB25G ( ),VARPB25A ( ),VARPB54D ( ),Laboratory isolate FCR3s1.6 Pf Trophozoite stage var gene cDNA,VARPB41F ( ),VARPB5G ( ),czapPFDd2.1; Debopam Chakrabarti,VARPB22F ( ),VARPB8A ( ),Ugandan isolate UAM17 Pf var gene cDNA (Trophozoite),VARPB49H ( ),ookinete library (12 h; 18h and 24 h after in vitro culture),In vitro adapted parasite UAS29b Pf Ring stage var gene cDNA,VARPB2F ( ),Ugandan isolate UAS19 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM36 Pf var gene cDNA (Trophozoite),VARPB23E ( ),VARPB28B ( ),Plasmodium berghei ookinete,Ugandan isolate UAS29 Pf var gene cDNA (Trophozoite),VARPB58A ( ),VARPB58G ( ),VARPB21B ( ),VARPB4G ( ),Ugandan isolate UAS25 Pf var gene cDNA (Trophozoite),VARPB28F ( ),VARPB56D ( ),Ugandan isolate UAM31 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM41 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS5 Pf Ring stage var gene cDNA,VARPB28E ( ),VARPB49F ( ),Ugandan isolate UAM45 Pf var gene cDNA (Trophozoite),VARPB34H ( ),VARPB50E ( ),In vitro adapted parasite UAS22b Pf Ring stage var gene cDNA,Ugandan isolate UAS26 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM40 Pf var gene cDNA (Trophozoite),Plasmodium yoelii sporozoite cDNA (sporozoites from salivary gland),VARPB13D ( ),VARPB1F ( ),VARPB21A ( ),Ugandan isolate UKS9 Pf var gene cDNA (Trophozoite),VARPB40D ( ),Pb cDNA #20; Charles Yowell and Jane Carlton (asynchronous blood stage),Ugandan isolate UAS23 Pf var gene cDNA (Trophozoite),VARPB34A ( ),VARPB53D ( ),Plasmodium yoelii liver stage LCM cDNA library (40 hour liver schizont),Ugandan isolate UKS15 Pf Ring stage var gene cDNA,Plasmodium berghei strain ANKA erythrocytic stage,Ugandan isolate UKS15 Pf var gene cDNA (Trophozoite),VARPB5H ( ),Ugandan isolate UAM37 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM52 Pf var gene cDNA (Trophozoite),VARPB18C ( ),VARPB34E ( ),VARPB15A ( ),Ugandan isolate UAM51 Pf var gene cDNA (Trophozoite),VARPB7D ( ),VARPB23B ( ),VARPB55B ( ),VARPB29F ( ),Plasmodium falciparum NF54 (D.A.Fidock) (asynchronous asexual blood stage),Ugandan isolate UKS7 Pf var gene cDNA (Trophozoite),VARPB54F ( ),In vitro adapted parasite UAM52b Pf Ring stage var gene cDNA,Laboratory isolate TM284 Pf Ring stage var gene cDNA,Ugandan isolate UAS11 Pf var gene cDNA (Trophozoite),Plasmodium falciparum FCB1 schizont,Ugandan isolate UAM35 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS27 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS38 Pf var gene cDNA (Trophozoite),VARPB26H ( ),Laboratory isolate DD2 Pf Ring stage var gene cDNA,VARPB22H ( ),VARPB31B ( ),VARPB35G ( ),VARPB42H ( ),VARPB53F ( ),Ugandan isolate UAM43 Pf var gene cDNA (Trophozoite),VARPB4H ( ),Plasmodium vivax,VARPB43G ( ),In vitro adapted parasite UAS41b Pf Ring stage var gene cDNA,PyBS (Asexual blood stages),Ugandan isolate UAM15 Pf var gene cDNA (Trophozoite),VARPB2D ( ),Plasmodium berghei midgut sporozoite,Plasmodium falciparum cDNA pUC8 Express Library (late erythrocytic-stage parasite mRNA),VARPB18F ( ),VARPB17G ( ),VARPB50H ( ),Plasmodium berghei erythrocytic schizont,Plasmodium berghei salivary grand sporozoite (salivary gland sporozoite),Plasmodium falciparum FcB1 schizont,VARPB3A ( ),VARPB48G ( ),VARPB55G ( ),VARPB40G ( ),VARPB42C ( ),Ugandan isolate UAM14 Pf var gene cDNA (Trophozoite),VARPB7G ( ),VARPB8C ( ),VARPB55C ( ),VARPB7A ( ),VARPB9C ( ),Blood stage Plasmodium falciparum cDNA library PfSau3a,Ugandan isolate UAM29 Pf var gene cDNA (Trophozoite),VARPB21H ( ),VARPB6D ( ),VARPB7F ( ),VARPB9B ( ),Ugandan isolate UAM28 Pf var gene cDNA (Trophozoite),VARPB14D ( ),VARPB23H ( ),Ugandan isolate UAS31 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS1 Pf var gene cDNA (Trophozoite),VARPB13A ( ),Ugandan isolate UAS17 Pf var gene cDNA (Trophozoite),VARPB6G ( ),Field isolate cDNA library,Ugandan isolate UAS16 Pf var gene cDNA (Trophozoite),VARPB58D ( ),VARPB8H ( ),VARPB4A ( ),VARPB24D ( ),VARPB36D ( ),VARPB3H ( ),VARPB53A ( ),VARPB6H ( ),VARPB54B ( ),VARPB19B ( ),VARPB29E ( ),VARPB54G ( ),VARPB7H ( ),VARPB22C ( ),VARPB48E ( ),VARPB54H ( ),VARPB7B ( ),GenoScope Schizont enriched,Ugandan isolate UKS14 Pf Trophozoite stage var gene cDNA,VARPB7E ( ),VARPB8B ( ),Ugandan isolate UKS3 Pf Ring stage var gene cDNA,VARPB8F ( ),VARPB60A ( ),Ugandan isolate UAM05 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS10 Pf var gene cDNA (Trophozoite),VARPB14C ( ),Ugandan isolate UAS10 Pf var gene cDNA (Trophozoite),VARPB42G ( ),VARPB35D ( ),Ugandan isolate UAS33 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS37 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS48 Pf var gene cDNA (Trophozoite),VARPB9H ( ),Ugandan isolate UKS17 Pf var gene cDNA (Trophozoite),VARPB22A ( ),VARPB4C ( ),VARPB5D ( ),VARPB22D ( ),VARPB2E ( ),VARPB35F ( ),VARPB47F ( ),VARPB53E ( ),VARPB2A ( ),cbsPfHB3.1; Debopam Chakrabarti,Ugandan isolate UAM33 Pf var gene cDNA (Trophozoite),VARPB20G ( ),VARPB3E ( ),Ugandan isolate UAS14 Pf var gene cDNA (Trophozoite),VARPB25C ( ),VARPB42B ( ),VARPB25F ( ),Ugandan isolate UAM48 Pf var gene cDNA (Trophozoite),VARPB22B ( ),WatanabePf3D7_cultured,XPYs Sugano cDNA library (erythrocytic stage),VARPB4D ( ),Ugandan isolate UAM13 Pf var gene cDNA (Trophozoite),VARPB11B ( ),VARPB1G ( ),VARPB56G ( ),Ugandan isolate UAS28 Pf var gene cDNA (Trophozoite),VARPB24G ( ),VARPB39G ( ),VARPB29A ( ),VARPB14B ( ),VARPB5E ( ),Ugandan isolate UAM38 Pf var gene cDNA (Trophozoite),VARPB43F ( ),VARPB58E ( ),Ugandan isolate UAS43 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM21 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS25 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS3 Pf var gene cDNA (Trophozoite),VARPB39C ( ),VARPB48A ( ),Ugandan isolate UAS07 Pf var gene cDNA (Trophozoite),VARPB24B ( ),VARPB59F ( ),VARPB27H ( ),VARPB31D ( ),VARPB47E ( ),VARPB6B ( ),Ugandan isolate UKS14 Pf var gene cDNA (Trophozoite),VARPB53B ( ),VARPB43C ( ),XPYw Sugano cDNA library (erythrocytic stage),Laboratory isolate 7G8 Pf Trophozoite stage var gene cDNA,VARPB1E ( ),Plasmodium yoelii,VARPB23D ( ),VARPB55A ( ),VARPB8G ( ),VARPB36C ( ),VARPB56A ( ),VARPB58F ( ),Ugandan isolate UAM26 Pf var gene cDNA (Trophozoite),VARPB27G ( ),VARPB15C ( ),Plasmodium falciparum 3D7 gametocyte cDNA library (gametocyte (stage III-V)),Ugandan isolate UKS25 Pf Ring stage var gene cDNA,VARPB31H ( ),Laboratory isolate 3D7AH1 Pf Ring stage var gene cDNA,Ugandan isolate UAS03 Pf var gene cDNA (Trophozoite),VARPB26F ( ),Ugandan isolate UAS32 Pf var gene cDNA (Trophozoite),VARPB27C ( ),VARPB26D ( ),VARPB43B ( ),Ugandan isolate UAM18 Pf var gene cDNA (Trophozoite),VARPB4B ( ),Pb sgSpz/ooSpz subtraction library,Ugandan isolate UAS34 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS5 Pf var gene cDNA (Trophozoite),VARPB24C ( ),VARPB6C ( ),VARPB56E ( ),Laboratory isolate 3D7AH1S.2 Pf Ring stage var gene cDNA,Ugandan isolate UKS7 Pf Ring stage var gene cDNA,VARPB59H ( ),SSH library of Plasmodium berghei strain K173 (erythrocytic stage),VARPB20B ( ),Ugandan isolate UAM44 Pf var gene cDNA (Trophozoite),VARPB27D ( ),VARPB40A ( ),VARPB5C ( ),VARPB60C ( ),Ugandan isolate UAS45 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS18 Pf var gene cDNA (Trophozoite),Ugandan isolate UKS13 Pf var gene cDNA (Trophozoite),VARPB22G ( ),VARPB28C ( ),VARPB59G ( ),In vitro adapted parasite UAS29b Pf Trophozoite stage var gene cDNA,Ugandan isolate UAM11 Pf var gene cDNA (Trophozoite),VARPB51B ( ),VARPB58H ( ),Ugandan isolate UAS46 Pf var gene cDNA (Trophozoite),Ugandan isolate UAM22 Pf var gene cDNA (Trophozoite),Ugandan isolate UAS44 Pf var gene cDNA (Trophozoite),Zhang/Gardner Pf 3D7 mixed asexual (Asexual stage),Ugandan isolate UKS47 Pf Trophozoite stage var gene cDNA,VARPB39D ( ),Ugandan isolate UAM42 Pf var gene cDNA (Trophozoite),VARPB24H ( ),Nc-1 pZ Tachyzoite cDNA Library,TgME49cDNA (in vitro Bradyzoite; 6day),Toxoplasma gondii encystation; subtracted cDNA,TgZAP-cDNA1 (tachyzoite),Tg COUG Tachyzoite cDNA Library,Nc 1314 Tachyzoite cDNA,Toxoplasma gondii,TgRH Tachyzoite cDNA,TgRH Tachyzoite Norm 5 cDNA Library,TgRH Tachyzoite FL cDNA,TgVEG Fully sporulated oocyst cDNA (Fully sporulated oocysts),TgRH*-Tachyzoite cDNA,TgVEG118 Tachyzoite cDNA Library,TgME49 invivo Bradyzoite cDNA (in vitro Bradyzoite; 6day),Nc-1 Tachyzoite cDNA Library,Neospora caninum,TgME49 invivo Bradyzoite cDNA size selected,Nc-1 Tachyzoite cDNA Library 2,differentially expressed gene in tachyzoite stage of Neospora caninum Korea isolate Nc-Kr2 (Tachy...,TgRH Tachyzoite Norm 7 cDNA Library,Toxoplasma gondii mRNA (T.Koyama),TgVEG Partially sporulated oocyst cDNA (Partially sporulated oocysts),Neospora caninum Lambda Zap cDNA library,Toxoplasma gondii Tachyzoite Library (Tachyzoite developmental stage),Tg CAST Tachyzoite cDNA Library 2,WatanabeTgRH (tachyzoites),TgRHcDNA,TgVEG118 Tachyzoite cDNA Library-2,TgRH Tachyzoite Subtracted cDNA Library,TgMAS Tachyzoite cDNA Library,Nc-LIV Tachyzoite cDNA Library,Toxoplasma gondii Bradyzoite Library (Bradyzoite developmental stage),Tg CAST Tachyzoite cDNA Library,RH tachyzoite cDNA library,TgME49 3 day invitro bradyzoite,TgVEG-Tachyzoite cDNA,TgME49 B7 Tachyzoite cDNA Library 1,TgRH Tachyzoite Norm 1 cDNA Library,Nc-1Tachyzoite cDNA,TgME49 Tachyzoite cDNA,TgME49 B7 Tachyzoite cDNA Library 2,Low iron culture (TvLI),non-normalized T1 cDNA library,Cot6 normalized T1 cDNA library,Cot1000 normalized T1 cDNA library,HMW C1 cDNA library,Low glucose culture (TvLG),Normal unsynchronized culture (TvEST) (Unsynchronized culture),VEC-mediated cytoadherence (TvVEC) (Amoeboid stage),Fibronectin-mediated cytoadherence (TvFN) (Amoeboid stage),G2/M trophozoite (TvG2M) (G1/S phase),Trichomonas vaginalis,Cold-induced pseudocyst (TvCS) (Pseudocyst stage),Leishmania major Amastigote full length cDNA library,Stage-specific mRNA,Trypanosoma congolense,Trypanosoma brucei rhodesiense ZAP II library (Insect form),Leishmania major,Leishmania mexicana,Trypanosoma congolense isolate IL300 normalised bloodstream stage,Leishmania major Amastigote Lambda Zap II library,Trypanosoma cruzi Y (Tomoo Tanaka),Leishmania braziliensis,Trypanosoma brucei strain 927 ESTs,sucrose-gradient-F23 (promastigote),Leishmania braziliensis procyclic stage; logarithmic growth phase,Trypanosoma cruzi amastigote cDNA library,LmLV39cDNA,Trypanosoma cruzi,Differentially expressed Trypanosoma brucei mRNAs,T. cruzi epimastigote normalized cDNA Library,TcTR (trypomastigote),Bloodstream form of serodeme ILTat1.1,Trypanosoma congolense isolate IL300 metacyclic stage,T. Cruzi epimastigote normalised cDNA Library,SM-Lib-Tc Tehuantepec 17WTS,page (promastigote),Random insertions of transposon MosHYG in Leishmania major (promastigote),Trypanosoma congolense isolate IL300 bloodstream stage,TcT-E (trypomastigote),sucrose-gradient-F25 (promastigote),Leishmania major promastigote full length cDNA library from stationary stage (day 10),Trypanosoma congolense isolate IL300 epimastigote stage,T.cruzi epimastigote normalized cDNA Library,MVAT4 bloodstream form of serodeme WRATat1.1,T. cruzi epimastigote normalised cDNA Library,SM-Lib-Tc Y BZR,Trypanosoma brucei,SM-Lib-Tc Tehuantepec 17LER,Leishmania major promastigote full length cDNA library from early logarithmic stage (day 3),Leishmania major promastigote full length cDNA library from logarithmic stage (day 7),Trypanosoma cruzi differential display cDNA library,T.cruzi epimastigote non-normalized cDNA Library,Trypanosoma congolense isolate IL300 procyclic stage,Trypanosoma cruzi CL Brener epimastigote,Leishmania infantum,Leishmania braziliensis amastigote stage; 72 hours post infection,Trypanosoma congolense isolate IL300 normalised metacyclic stage,TcAM (amastigote-like)', `bp_overlap_gte` = '100', `overlapOrNot` = 'does overlap with a gene', `o-fields` = 'NULL', `o-tables` = 'NULL', ..., .url = if(.json) 'http://eupathdb.org/eupathdb/webservices/EstQuestions/EstsWithGeneOverlap.json' else 'http://eupathdb.org/eupathdb/webservices/EstQuestions/EstsWithGeneOverlap.xml', .convert = NULL, .json = TRUE
)
{
`libraryIdGenes` <- checkValues(`libraryIdGenes`, "`EstsWithGeneOverlap.libraryIdGenes.options`", 'libraryIdGenes', TRUE)
`overlapOrNot` <- checkValues(`overlapOrNot`, c("does overlap with a gene", "does not overlap with a gene"), 'overlapOrNot', FALSE)
if(!missing(`o-fields`)) `o-fields` <- checkValues(`o-fields`, c("all", "none", "primary_key", "organism", "length", "dbest_name",
"assembly_source_id", "vector", "stage", "organism_text", "ncbi_tax_id",
"sequence", "wdk_weight"), 'o-fields', TRUE)
if(!missing(`o-tables`)) `o-tables` <- checkValues(`o-tables`, c("all", "none"), 'o-tables', TRUE)
params = list(
'libraryIdGenes' = `libraryIdGenes`,
'bp_overlap_gte' = `bp_overlap_gte`,
'overlapOrNot' = `overlapOrNot`
)
if(!missing(`o-fields`))
params[['o-fields']] = `o-fields`
if(!missing(`o-tables`))
params[['o-tables']] = `o-tables`
ans = getForm(.url, .params = params, ...)
if(is.null(.convert) && .json) return(fromJSON(ans))
if(!is.null(.convert))
.convert(ans)
else if(!is.null(type <- attr(ans, 'Content-Type')) && type == 'text/json')
convertJSON(ans)
else
ans
}
`EstsWithGeneOverlap.libraryIdGenes.options` =
c("Entamoeba dispar", "Entamoeba histolytica trophozoite", "E. histolytica Normalized cDNA library",
"Entamoeba cDNA clone 6 (trophozoite)", "Entamoeba histolytica HM-1:IMSS",
"Entamoeba cDNA to mRNA (trophozoite)", "Entamoeba histolytica YS-27",
"Entamoeba histolytica", "Entamoeba dispar cDNAs (trophozoite)",
"Entamoeba histolytica HM-1:IMSS mRNA (Tomoo Tanaka) (trophozoite)",
"WatanabeCpHNJ-1 (oocyst)", "Cryptosporidium muris", "XCP Sugano cDNA library (sporozoite stage)",
"uniZAPCpIOWAsporoLib3 (sporozoite)", "Cryptosporidium muris (strain RN66) cDNA library; stage oocyst",
"pSKIIminusCpIOWAsporoLib2 (sporozoite)", "C. parvum KSU-1 normalized sporozoite",
"Pooled Cryptosporidium parvum KSU-1 enriched 24-48hr post-infection; in-vitro non-normalized nano...",
"Cryptosporidium parvum", "uniZAPCpIOWAsporoLib1 (sporozoite)",
"Giardia lamblia trophozoite (Trophozoite)", "Giardia Assemblage A isolate WB",
"trophozoite cDNA", "Encephalitozoon cuniculi", "RACE-PCR products from Encephalitozoon cuniculi (Dormant spores)",
"Laboratory isolate 3D7AH1 Pf Trophozoite stage var gene cDNA",
"VARPB11A ( )", "VARPB13G ( )", "VARPB18H ( )", "VARPB19D ( )",
"VARPB27A ( )", "Ugandan isolate UKS2 Pf var gene cDNA (Trophozoite)",
"VARPB15E ( )", "VARPB27B ( )", "VARPB56F ( )", "VARPB53G ( )",
"VARPB59D ( )", "Laboratory isolate 7G8 Pf Ring stage var gene cDNA",
"VARPB19H ( )", "Laboratory isolate FCR3s1.6 Pf Ring stage var gene cDNA",
"SSH library of Plasmodium berghei strain RQ (erythrocytic stage)",
"VARPB56C ( )", "Ugandan isolate UAS40 Pf var gene cDNA (Trophozoite)",
"VARPB42F ( )", "VARPB14A ( )", "VARPB1D ( )", "VARPB23F ( )",
"Ugandan isolate UAS22 Pf var gene cDNA (Trophozoite)", "VARPB16G ( )",
"VARPB3G ( )", "VARPB57B ( )", "VARPB32C ( )", "VARPB18A ( )",
"VARPB4F ( )", "VARPB54C ( )", "Ugandan isolate UAM50 Pf var gene cDNA (Trophozoite)",
"VARPB59A ( )", "Blood stage Plasmodium falciparum cDNA library PFExtensions",
"VARPB34F ( )", "VARPB26E ( )", "VARPB5F ( )", "Ugandan isolate UAS24 Pf var gene cDNA (Trophozoite)",
"VARPB29B ( )", "VARPB50G ( )", "Laboratory isolate FCR3 Pf Trophozoite stage var gene cDNA",
"Ugandan isolate UAS06 Pf var gene cDNA (Trophozoite)", "VARPB55D ( )",
"In vitro adapted parasite UAS31b Pf Trophozoite stage var gene cDNA",
"Ugandan isolate UAM16 Pf var gene cDNA (Trophozoite)", "VARPB1H ( )",
"VARPB28A ( )", "VARPB40H ( )", "Ugandan isolate UKM64 Pf Ring stage var gene cDNA",
"VARPB9A ( )", "Plasmodium berghei NK65 salivary gland sporozoite",
"WatanabePv", "VARPB51A ( )", "Laboratory isolate DD2 Pf Trophozoite stage var gene cDNA",
"Plasmodium berghei ookinete stage", "VARPB22E ( )", "VARPB8D ( )",
"XPF Sugano cDNA library (erythrocytic stage)", "VARPB59C ( )",
"Ugandan isolate UKS4 Pf var gene cDNA (Trophozoite)", "VARPB3C ( )",
"VARPB42D ( )", "Ugandan isolate UKS47 Pf Ring stage var gene cDNA",
"VARPB27E ( )", "VARPB51F ( )", "VARPB21G ( )", "Blood stage Plasmodium falciparum cDNA library PfSuOrig",
"Ugandan isolate UAM32 Pf var gene cDNA (Trophozoite)", "VARPB31G ( )",
"VARPB3D ( )", "Ugandan isolate UAM25 Pf var gene cDNA (Trophozoite)",
"VARPB58C ( )", "VARPB31A ( )", "VARPB51H ( )", "VARPB6F ( )",
"VARPB28G ( )", "VARPB60B ( )", "Blood stage Plasmodium falciparum cDNA library PfBamH1",
"Laboratory isolate FCR3 Pf Ring stage var gene cDNA", "Plasmodium yoelli 17X axenic hepatic stages",
"Ugandan isolate UAS36 Pf var gene cDNA (Trophozoite)", "Laboratory isolate 3D7AH1S.2 Pf Trophozoite stage var gene cDNA",
"Ugandan isolate UAS21 Pf var gene cDNA (Trophozoite)", "VARPB16A ( )",
"VARPB23G ( )", "Ugandan isolate UAM27 Pf var gene cDNA (Trophozoite)",
"VARPB26G ( )", "VARPB29G ( )", "Ugandan isolate UAS47 Pf var gene cDNA (Trophozoite)",
"VARPB48B ( )", "VARPB55F ( )", "XPB Sugano cDNA library (erythrocytic stage)",
"Ugandan isolate UAM39 Pf var gene cDNA (Trophozoite)", "VARPB48H ( )",
"Plasmodium falciparum", "VARPB35H ( )", "VARPB40E ( )", "Ugandan isolate UKS12 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKM19 Pf Ring stage var gene cDNA", "VARPB29C ( )",
"VARPB29H ( )", "VARPB13C ( )", "VARPB17D ( )", "VARPB24A ( )",
"VARPB3F ( )", "VARPB56H ( )", "VARPB17A ( )", "VARPB40F ( )",
"Ugandan isolate UAM49 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS41 Pf var gene cDNA (Trophozoite)",
"VARPB36H ( )", "VARPB43H ( )", "Ugandan isolate UAS13 Pf var gene cDNA (Trophozoite)",
"Plasmodium berghei liver stage parasite", "VARPB58B ( )", "Plasmodium berghei",
"Ugandan isolate UAS12 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKM64 Pf Trophozoite stage var gene cDNA",
"VARPB47G ( )", "VARPB26B ( )", "In vitro adapted parasite UAS22b Pf Trophozoite stage var gene cDNA",
"VARPB53C ( )", "VARPB32F ( )", "VARPB43D ( )", "VARPB5B ( )",
"VARPB25E ( )", "VARPB56B ( )", "PvBEcDNA (Assexual Blood Stages)",
"Ugandan isolate UAM46 Pf var gene cDNA (Trophozoite)", "VARPB25B ( )",
"VARPB57C ( )", "VARPB59B ( )", "VARPB6A ( )", "Laboratory isolate TM284 Pf Trophozoite stage var gene cDNA",
"Plasmodium falciparum 3D7 asexual cDNA", "VARPB24E ( )", "Ugandan isolate UAM08 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS39 Pf var gene cDNA (Trophozoite)", "VARPB1C ( )",
"VARPB39E ( )", "Ugandan isolate UAM47 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM09 Pf var gene cDNA (Trophozoite)", "VARPB5A ( )",
"VARPB57A ( )", "Ugandan isolate UAM34 Pf var gene cDNA (Trophozoite)",
"VARPB20F ( )", "VARPB50F ( )", "Plasmodium berghei cDNA library",
"Ugandan isolate UKS14 Pf Ring stage var gene cDNA", "VARPB13H ( )",
"VARPB4E ( )", "VARPB54E ( )", "Ugandan isolate UKM19 Pf Trophozoite stage var gene cDNA",
"VARPB48C ( )", "VARPB20D ( )", "VARPB3B ( )", "VARPB31F ( )",
"In vitro adapted parasite UAM52b Pf Trophozoite stage var gene cDNA",
"VARPB48D ( )", "VARPB59E ( )", "VARPB39B ( )", "VARPB39H ( )",
"VARPB43E ( )", "Plasmodium yoelii yoelii from Anopheles stephensi midgut (oocyst)",
"Sugano Malaria cDNA library (erythrocytic stage)", "Ugandan isolate UAS08 Pf var gene cDNA (Trophozoite)",
"VARPB27F ( )", "VARPB55H ( )", "VARPB6E ( )", "Ugandan isolate UAM12 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM20 Pf var gene cDNA (Trophozoite)", "VARPB21E ( )",
"Ugandan isolate UAS20 Pf var gene cDNA (Trophozoite)", "VARPB7C ( )",
"Pb cDNA #17; Tommaso Pace; Marta Ponzi; and Clara Frontali (asynchronous blood stage)",
"VARPB53H ( )", "Ugandan isolate UAM53 Pf var gene cDNA (Trophozoite)",
"WatanabePy17XL", "VARPB54A ( )", "XPV Sugano cDNA library (erythrocytic stage)",
"In vitro adapted parasite UAS31b Pf Ring stage var gene cDNA",
"Ugandan isolate UKS7 Pf Trophozoite stage var gene cDNA", "VARPB30A ( )",
"VARPB51G ( )", "In vitro adapted parasite UAS41b Pf Trophozoite stage var gene cDNA",
"Ugandan isolate UAM23 Pf var gene cDNA (Trophozoite)", "VARPB25G ( )",
"VARPB25A ( )", "VARPB54D ( )", "Laboratory isolate FCR3s1.6 Pf Trophozoite stage var gene cDNA",
"VARPB41F ( )", "VARPB5G ( )", "czapPFDd2.1; Debopam Chakrabarti",
"VARPB22F ( )", "VARPB8A ( )", "Ugandan isolate UAM17 Pf var gene cDNA (Trophozoite)",
"VARPB49H ( )", "ookinete library (12 h; 18h and 24 h after in vitro culture)",
"In vitro adapted parasite UAS29b Pf Ring stage var gene cDNA",
"VARPB2F ( )", "Ugandan isolate UAS19 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM36 Pf var gene cDNA (Trophozoite)", "VARPB23E ( )",
"VARPB28B ( )", "Plasmodium berghei ookinete", "Ugandan isolate UAS29 Pf var gene cDNA (Trophozoite)",
"VARPB58A ( )", "VARPB58G ( )", "VARPB21B ( )", "VARPB4G ( )",
"Ugandan isolate UAS25 Pf var gene cDNA (Trophozoite)", "VARPB28F ( )",
"VARPB56D ( )", "Ugandan isolate UAM31 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM41 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKS5 Pf Ring stage var gene cDNA",
"VARPB28E ( )", "VARPB49F ( )", "Ugandan isolate UAM45 Pf var gene cDNA (Trophozoite)",
"VARPB34H ( )", "VARPB50E ( )", "In vitro adapted parasite UAS22b Pf Ring stage var gene cDNA",
"Ugandan isolate UAS26 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM40 Pf var gene cDNA (Trophozoite)",
"Plasmodium yoelii sporozoite cDNA (sporozoites from salivary gland)",
"VARPB13D ( )", "VARPB1F ( )", "VARPB21A ( )", "Ugandan isolate UKS9 Pf var gene cDNA (Trophozoite)",
"VARPB40D ( )", "Pb cDNA #20; Charles Yowell and Jane Carlton (asynchronous blood stage)",
"Ugandan isolate UAS23 Pf var gene cDNA (Trophozoite)", "VARPB34A ( )",
"VARPB53D ( )", "Plasmodium yoelii liver stage LCM cDNA library (40 hour liver schizont)",
"Ugandan isolate UKS15 Pf Ring stage var gene cDNA", "Plasmodium berghei strain ANKA erythrocytic stage",
"Ugandan isolate UKS15 Pf var gene cDNA (Trophozoite)", "VARPB5H ( )",
"Ugandan isolate UAM37 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAM52 Pf var gene cDNA (Trophozoite)",
"VARPB18C ( )", "VARPB34E ( )", "VARPB15A ( )", "Ugandan isolate UAM51 Pf var gene cDNA (Trophozoite)",
"VARPB7D ( )", "VARPB23B ( )", "VARPB55B ( )", "VARPB29F ( )",
"Plasmodium falciparum NF54 (D.A.Fidock) (asynchronous asexual blood stage)",
"Ugandan isolate UKS7 Pf var gene cDNA (Trophozoite)", "VARPB54F ( )",
"In vitro adapted parasite UAM52b Pf Ring stage var gene cDNA",
"Laboratory isolate TM284 Pf Ring stage var gene cDNA", "Ugandan isolate UAS11 Pf var gene cDNA (Trophozoite)",
"Plasmodium falciparum FCB1 schizont", "Ugandan isolate UAM35 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS27 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS38 Pf var gene cDNA (Trophozoite)",
"VARPB26H ( )", "Laboratory isolate DD2 Pf Ring stage var gene cDNA",
"VARPB22H ( )", "VARPB31B ( )", "VARPB35G ( )", "VARPB42H ( )",
"VARPB53F ( )", "Ugandan isolate UAM43 Pf var gene cDNA (Trophozoite)",
"VARPB4H ( )", "Plasmodium vivax", "VARPB43G ( )", "In vitro adapted parasite UAS41b Pf Ring stage var gene cDNA",
"PyBS (Asexual blood stages)", "Ugandan isolate UAM15 Pf var gene cDNA (Trophozoite)",
"VARPB2D ( )", "Plasmodium berghei midgut sporozoite", "Plasmodium falciparum cDNA pUC8 Express Library (late erythrocytic-stage parasite mRNA)",
"VARPB18F ( )", "VARPB17G ( )", "VARPB50H ( )", "Plasmodium berghei erythrocytic schizont",
"Plasmodium berghei salivary grand sporozoite (salivary gland sporozoite)",
"Plasmodium falciparum FcB1 schizont", "VARPB3A ( )", "VARPB48G ( )",
"VARPB55G ( )", "VARPB40G ( )", "VARPB42C ( )", "Ugandan isolate UAM14 Pf var gene cDNA (Trophozoite)",
"VARPB7G ( )", "VARPB8C ( )", "VARPB55C ( )", "VARPB7A ( )",
"VARPB9C ( )", "Blood stage Plasmodium falciparum cDNA library PfSau3a",
"Ugandan isolate UAM29 Pf var gene cDNA (Trophozoite)", "VARPB21H ( )",
"VARPB6D ( )", "VARPB7F ( )", "VARPB9B ( )", "Ugandan isolate UAM28 Pf var gene cDNA (Trophozoite)",
"VARPB14D ( )", "VARPB23H ( )", "Ugandan isolate UAS31 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS1 Pf var gene cDNA (Trophozoite)", "VARPB13A ( )",
"Ugandan isolate UAS17 Pf var gene cDNA (Trophozoite)", "VARPB6G ( )",
"Field isolate cDNA library", "Ugandan isolate UAS16 Pf var gene cDNA (Trophozoite)",
"VARPB58D ( )", "VARPB8H ( )", "VARPB4A ( )", "VARPB24D ( )",
"VARPB36D ( )", "VARPB3H ( )", "VARPB53A ( )", "VARPB6H ( )",
"VARPB54B ( )", "VARPB19B ( )", "VARPB29E ( )", "VARPB54G ( )",
"VARPB7H ( )", "VARPB22C ( )", "VARPB48E ( )", "VARPB54H ( )",
"VARPB7B ( )", "GenoScope Schizont enriched", "Ugandan isolate UKS14 Pf Trophozoite stage var gene cDNA",
"VARPB7E ( )", "VARPB8B ( )", "Ugandan isolate UKS3 Pf Ring stage var gene cDNA",
"VARPB8F ( )", "VARPB60A ( )", "Ugandan isolate UAM05 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS10 Pf var gene cDNA (Trophozoite)", "VARPB14C ( )",
"Ugandan isolate UAS10 Pf var gene cDNA (Trophozoite)", "VARPB42G ( )",
"VARPB35D ( )", "Ugandan isolate UAS33 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAS37 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS48 Pf var gene cDNA (Trophozoite)",
"VARPB9H ( )", "Ugandan isolate UKS17 Pf var gene cDNA (Trophozoite)",
"VARPB22A ( )", "VARPB4C ( )", "VARPB5D ( )", "VARPB22D ( )",
"VARPB2E ( )", "VARPB35F ( )", "VARPB47F ( )", "VARPB53E ( )",
"VARPB2A ( )", "cbsPfHB3.1; Debopam Chakrabarti", "Ugandan isolate UAM33 Pf var gene cDNA (Trophozoite)",
"VARPB20G ( )", "VARPB3E ( )", "Ugandan isolate UAS14 Pf var gene cDNA (Trophozoite)",
"VARPB25C ( )", "VARPB42B ( )", "VARPB25F ( )", "Ugandan isolate UAM48 Pf var gene cDNA (Trophozoite)",
"VARPB22B ( )", "WatanabePf3D7_cultured", "XPYs Sugano cDNA library (erythrocytic stage)",
"VARPB4D ( )", "Ugandan isolate UAM13 Pf var gene cDNA (Trophozoite)",
"VARPB11B ( )", "VARPB1G ( )", "VARPB56G ( )", "Ugandan isolate UAS28 Pf var gene cDNA (Trophozoite)",
"VARPB24G ( )", "VARPB39G ( )", "VARPB29A ( )", "VARPB14B ( )",
"VARPB5E ( )", "Ugandan isolate UAM38 Pf var gene cDNA (Trophozoite)",
"VARPB43F ( )", "VARPB58E ( )", "Ugandan isolate UAS43 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM21 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UKS25 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS3 Pf var gene cDNA (Trophozoite)", "VARPB39C ( )",
"VARPB48A ( )", "Ugandan isolate UAS07 Pf var gene cDNA (Trophozoite)",
"VARPB24B ( )", "VARPB59F ( )", "VARPB27H ( )", "VARPB31D ( )",
"VARPB47E ( )", "VARPB6B ( )", "Ugandan isolate UKS14 Pf var gene cDNA (Trophozoite)",
"VARPB53B ( )", "VARPB43C ( )", "XPYw Sugano cDNA library (erythrocytic stage)",
"Laboratory isolate 7G8 Pf Trophozoite stage var gene cDNA",
"VARPB1E ( )", "Plasmodium yoelii", "VARPB23D ( )", "VARPB55A ( )",
"VARPB8G ( )", "VARPB36C ( )", "VARPB56A ( )", "VARPB58F ( )",
"Ugandan isolate UAM26 Pf var gene cDNA (Trophozoite)", "VARPB27G ( )",
"VARPB15C ( )", "Plasmodium falciparum 3D7 gametocyte cDNA library (gametocyte (stage III-V))",
"Ugandan isolate UKS25 Pf Ring stage var gene cDNA", "VARPB31H ( )",
"Laboratory isolate 3D7AH1 Pf Ring stage var gene cDNA", "Ugandan isolate UAS03 Pf var gene cDNA (Trophozoite)",
"VARPB26F ( )", "Ugandan isolate UAS32 Pf var gene cDNA (Trophozoite)",
"VARPB27C ( )", "VARPB26D ( )", "VARPB43B ( )", "Ugandan isolate UAM18 Pf var gene cDNA (Trophozoite)",
"VARPB4B ( )", "Pb sgSpz/ooSpz subtraction library", "Ugandan isolate UAS34 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS5 Pf var gene cDNA (Trophozoite)", "VARPB24C ( )",
"VARPB6C ( )", "VARPB56E ( )", "Laboratory isolate 3D7AH1S.2 Pf Ring stage var gene cDNA",
"Ugandan isolate UKS7 Pf Ring stage var gene cDNA", "VARPB59H ( )",
"SSH library of Plasmodium berghei strain K173 (erythrocytic stage)",
"VARPB20B ( )", "Ugandan isolate UAM44 Pf var gene cDNA (Trophozoite)",
"VARPB27D ( )", "VARPB40A ( )", "VARPB5C ( )", "VARPB60C ( )",
"Ugandan isolate UAS45 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS18 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UKS13 Pf var gene cDNA (Trophozoite)", "VARPB22G ( )",
"VARPB28C ( )", "VARPB59G ( )", "In vitro adapted parasite UAS29b Pf Trophozoite stage var gene cDNA",
"Ugandan isolate UAM11 Pf var gene cDNA (Trophozoite)", "VARPB51B ( )",
"VARPB58H ( )", "Ugandan isolate UAS46 Pf var gene cDNA (Trophozoite)",
"Ugandan isolate UAM22 Pf var gene cDNA (Trophozoite)", "Ugandan isolate UAS44 Pf var gene cDNA (Trophozoite)",
"Zhang/Gardner Pf 3D7 mixed asexual (Asexual stage)", "Ugandan isolate UKS47 Pf Trophozoite stage var gene cDNA",
"VARPB39D ( )", "Ugandan isolate UAM42 Pf var gene cDNA (Trophozoite)",
"VARPB24H ( )", "Nc-1 pZ Tachyzoite cDNA Library", "TgME49cDNA (in vitro Bradyzoite; 6day)",
"Toxoplasma gondii encystation; subtracted cDNA", "TgZAP-cDNA1 (tachyzoite)",
"Tg COUG Tachyzoite cDNA Library", "Nc 1314 Tachyzoite cDNA",
"Toxoplasma gondii", "TgRH Tachyzoite cDNA", "TgRH Tachyzoite Norm 5 cDNA Library",
"TgRH Tachyzoite FL cDNA", "TgVEG Fully sporulated oocyst cDNA (Fully sporulated oocysts)",
"TgRH*-Tachyzoite cDNA", "TgVEG118 Tachyzoite cDNA Library",
"TgME49 invivo Bradyzoite cDNA (in vitro Bradyzoite; 6day)",
"Nc-1 Tachyzoite cDNA Library", "Neospora caninum", "TgME49 invivo Bradyzoite cDNA size selected",
"Nc-1 Tachyzoite cDNA Library 2", "differentially expressed gene in tachyzoite stage of Neospora caninum Korea isolate Nc-Kr2 (Tachy...",
"TgRH Tachyzoite Norm 7 cDNA Library", "Toxoplasma gondii mRNA (T.Koyama)",
"TgVEG Partially sporulated oocyst cDNA (Partially sporulated oocysts)",
"Neospora caninum Lambda Zap cDNA library", "Toxoplasma gondii Tachyzoite Library (Tachyzoite developmental stage)",
"Tg CAST Tachyzoite cDNA Library 2", "WatanabeTgRH (tachyzoites)",
"TgRHcDNA", "TgVEG118 Tachyzoite cDNA Library-2", "TgRH Tachyzoite Subtracted cDNA Library",
"TgMAS Tachyzoite cDNA Library", "Nc-LIV Tachyzoite cDNA Library",
"Toxoplasma gondii Bradyzoite Library (Bradyzoite developmental stage)",
"Tg CAST Tachyzoite cDNA Library", "RH tachyzoite cDNA library",
"TgME49 3 day invitro bradyzoite", "TgVEG-Tachyzoite cDNA", "TgME49 B7 Tachyzoite cDNA Library 1",
"TgRH Tachyzoite Norm 1 cDNA Library", "Nc-1Tachyzoite cDNA",
"TgME49 Tachyzoite cDNA", "TgME49 B7 Tachyzoite cDNA Library 2",
"Low iron culture (TvLI)", "non-normalized T1 cDNA library",
"Cot6 normalized T1 cDNA library", "Cot1000 normalized T1 cDNA library",
"HMW C1 cDNA library", "Low glucose culture (TvLG)", "Normal unsynchronized culture (TvEST) (Unsynchronized culture)",
"VEC-mediated cytoadherence (TvVEC) (Amoeboid stage)", "Fibronectin-mediated cytoadherence (TvFN) (Amoeboid stage)",
"G2/M trophozoite (TvG2M) (G1/S phase)", "Trichomonas vaginalis",
"Cold-induced pseudocyst (TvCS) (Pseudocyst stage)", "Leishmania major Amastigote full length cDNA library",
"Stage-specific mRNA", "Trypanosoma congolense", "Trypanosoma brucei rhodesiense ZAP II library (Insect form)",
"Leishmania major", "Leishmania mexicana", "Trypanosoma congolense isolate IL300 normalised bloodstream stage",
"Leishmania major Amastigote Lambda Zap II library", "Trypanosoma cruzi Y (Tomoo Tanaka)",
"Leishmania braziliensis", "Trypanosoma brucei strain 927 ESTs",
"sucrose-gradient-F23 (promastigote)", "Leishmania braziliensis procyclic stage; logarithmic growth phase",
"Trypanosoma cruzi amastigote cDNA library", "LmLV39cDNA", "Trypanosoma cruzi",
"Differentially expressed Trypanosoma brucei mRNAs", "T. cruzi epimastigote normalized cDNA Library",
"TcTR (trypomastigote)", "Bloodstream form of serodeme ILTat1.1",
"Trypanosoma congolense isolate IL300 metacyclic stage", "T. Cruzi epimastigote normalised cDNA Library",
"SM-Lib-Tc Tehuantepec 17WTS", "page (promastigote)", "Random insertions of transposon MosHYG in Leishmania major (promastigote)",
"Trypanosoma congolense isolate IL300 bloodstream stage", "TcT-E (trypomastigote)",
"sucrose-gradient-F25 (promastigote)", "Leishmania major promastigote full length cDNA library from stationary stage (day 10)",
"Trypanosoma congolense isolate IL300 epimastigote stage", "T.cruzi epimastigote normalized cDNA Library",
"MVAT4 bloodstream form of serodeme WRATat1.1", "T. cruzi epimastigote normalised cDNA Library",
"SM-Lib-Tc Y BZR", "Trypanosoma brucei", "SM-Lib-Tc Tehuantepec 17LER",
"Leishmania major promastigote full length cDNA library from early logarithmic stage (day 3)",
"Leishmania major promastigote full length cDNA library from logarithmic stage (day 7)",
"Trypanosoma cruzi differential display cDNA library", "T.cruzi epimastigote non-normalized cDNA Library",
"Trypanosoma congolense isolate IL300 procyclic stage", "Trypanosoma cruzi CL Brener epimastigote",
"Leishmania infantum", "Leishmania braziliensis amastigote stage; 72 hours post infection",
"Trypanosoma congolense isolate IL300 normalised metacyclic stage",
"TcAM (amastigote-like)")
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