API for greenelab/ADAGEpath
ADAGE-based Signature Analysis

Global functions
ADAGEpath Man page
ADAGEpath-package Man page
PAO1orthologs Man page
PAcompendium Man page
TDM_RNAseq Man page Source code
annotate_genes_in_signatures Man page Source code
annotate_shared_signatures Man page Source code
annotate_signatures_with_genesets Man page Source code
build_gene_geneset_map Man page Source code
build_limma Man page Source code
build_signature_overlap_matrix Man page Source code
calculate_activity Man page Source code
calculate_marginal_activity Man page Source code
check_accession Man page Source code
check_input Man page Source code
combine_geneset_outputs Man page Source code
download_raw Man page Source code
eADAGEmodel Man page
enrich_test Man page Source code
experimentID Man page
extract_signatures Man page Source code
fetch_geneset Man page Source code
find_associated_signatures Man page Source code
geneinfo Man page
get_active_signatures Man page Source code
get_paretofront Man page Source code
get_sample_info Man page Source code
impute_miss_values Man page Source code
load_dataset Man page Source code
map_value_to_color Man page Source code
match_IDs Man page Source code
one_signature Man page Source code
one_signature_activity Man page Source code
operons Man page
plot_activity_heatmap Man page Source code
plot_marginal_activation Man page Source code
plot_signature_overlap Man page Source code
plot_volcano Man page Source code
prepare_marginal_matrix Man page Source code
probedistribution Man page
process_celfiles Man page Source code
quantile_norm Man page Source code
remove_redundant_signatures Man page Source code
signature_geneset_activity Man page Source code
test_signature_overlap Man page Source code
to_LocusTag Man page Source code
to_symbol Man page Source code
visualize_gene_network Man page Source code
zeroone_norm Man page Source code
greenelab/ADAGEpath documentation built on Sept. 24, 2017, 2:35 a.m.