API for greenelab/ADAGEpath
ADAGE-based Signature Analysis
| Global functions | |
|---|---|
| ADAGEpath | Man page |
| ADAGEpath-package | Man page |
| PAO1orthologs | Man page |
| PAcompendium | Man page |
| TDM_RNAseq | Man page Source code |
| annotate_genes_in_signatures | Man page Source code |
| annotate_shared_signatures | Man page Source code |
| annotate_signatures_with_genesets | Man page Source code |
| build_gene_geneset_map | Man page Source code |
| build_limma | Man page Source code |
| build_signature_overlap_matrix | Man page Source code |
| calculate_activity | Man page Source code |
| calculate_marginal_activity | Man page Source code |
| check_accession | Man page Source code |
| check_input | Man page Source code |
| combine_geneset_outputs | Man page Source code |
| download_raw | Man page Source code |
| eADAGEmodel | Man page |
| enrich_test | Man page Source code |
| experimentID | Man page |
| extract_signatures | Man page Source code |
| fetch_geneset | Man page Source code |
| find_associated_signatures | Man page Source code |
| geneinfo | Man page |
| get_active_signatures | Man page Source code |
| get_paretofront | Man page Source code |
| get_sample_info | Man page Source code |
| impute_miss_values | Man page Source code |
| load_dataset | Man page Source code |
| map_value_to_color | Man page Source code |
| match_IDs | Man page Source code |
| one_signature | Man page Source code |
| one_signature_activity | Man page Source code |
| operons | Man page |
| plot_activity_heatmap | Man page Source code |
| plot_marginal_activation | Man page Source code |
| plot_signature_overlap | Man page Source code |
| plot_volcano | Man page Source code |
| prepare_marginal_matrix | Man page Source code |
| probedistribution | Man page |
| process_celfiles | Man page Source code |
| quantile_norm | Man page Source code |
| remove_redundant_signatures | Man page Source code |
| signature_geneset_activity | Man page Source code |
| test_signature_overlap | Man page Source code |
| to_LocusTag | Man page Source code |
| to_symbol | Man page Source code |
| visualize_gene_network | Man page Source code |
| zeroone_norm | Man page Source code |
