to_LocusTag: Converting gene ID to locus tag

Description Usage Arguments Value

View source: R/load_data.R

Description

Converts the input gene ID to PAO1 locus tag that are used in ADAGE models. It currently can convert gene IDs on AFFY chip, PAO1 gene symbols, and PAO1 gene orthologs in other P.a. strains. It returns NA if the input is not recognized as one of above.

Usage

1
to_LocusTag(input_ID, ref_IDs)

Arguments

input_ID

character, the input gene ID.

ref_IDs

a vector storing reference gene IDs that do not need conversion

Value

the corresponding PAO1 locus tag ("PAXXXX") for the input gene or NA if the input gene is not recognized.


greenelab/ADAGEpath documentation built on Sept. 24, 2017, 2:35 a.m.