to_LocusTag: Converting gene ID to locus tag
In greenelab/ADAGEpath: ADAGE-based Signature Analysis
to_LocusTag R Documentation
Converting gene ID to locus tag
Description
Converts the input gene ID to PAO1 locus tag that are used in ADAGE models.
It currently can convert gene IDs on AFFY chip, PAO1 gene symbols, and
PAO1 gene orthologs in other P.a. strains. It returns NA if the input is not
recognized as one of above.
Usage
to_LocusTag(input_ID, ref_IDs)
Arguments
input_ID
character, the input gene ID.
ref_IDs
a vector storing reference gene IDs that do not need
conversion
Value
the corresponding PAO1 locus tag ("PAXXXX") for the input gene or NA
if the input gene is not recognized.
greenelab/ADAGEpath documentation built on May 25, 2022, 7:11 a.m.
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| to_LocusTag | R Documentation |
Converting gene ID to locus tag
Description
Converts the input gene ID to PAO1 locus tag that are used in ADAGE models. It currently can convert gene IDs on AFFY chip, PAO1 gene symbols, and PAO1 gene orthologs in other P.a. strains. It returns NA if the input is not recognized as one of above.
Usage
to_LocusTag(input_ID, ref_IDs)
Arguments
input_ID |
character, the input gene ID. |
ref_IDs |
a vector storing reference gene IDs that do not need conversion |
Value
the corresponding PAO1 locus tag ("PAXXXX") for the input gene or NA if the input gene is not recognized.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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