enrich_test: Gene set enrichment test
In greenelab/ADAGEpath: ADAGE-based Signature Analysis
View source: R/process_signature.R
enrich_test R Documentation
Gene set enrichment test
Description
Performs a one-side fisher exact test to determine whether two sets of genes
have significant overlap.
Usage
enrich_test(set1, set2, set_all)
Arguments
set1
character vector storing genes in the first gene set.
set2
character vector storing genes in the second gene set.
set_all
character vector storing all possible genes to choose from.
Value
object returned by fisher.test() function, which is a list with
class "htest" containing p.value, conf.int, estimate, and so on.
See Also
fisher.test
greenelab/ADAGEpath documentation built on May 25, 2022, 7:11 a.m.
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View source: R/process_signature.R
| enrich_test | R Documentation |
Gene set enrichment test
Description
Performs a one-side fisher exact test to determine whether two sets of genes have significant overlap.
Usage
enrich_test(set1, set2, set_all)
Arguments
set1 |
character vector storing genes in the first gene set. |
set2 |
character vector storing genes in the second gene set. |
set_all |
character vector storing all possible genes to choose from. |
Value
object returned by fisher.test() function, which is a list with class "htest" containing p.value, conf.int, estimate, and so on.
See Also
fisher.test
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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