PAO1orthologs: Pseudomonas aeruginosa PAO1 strain orthologs
In greenelab/ADAGEpath: ADAGE-based Signature Analysis
PAO1orthologs R Documentation
Pseudomonas aeruginosa PAO1 strain orthologs
Description
Pseudomonas aeruginosa PAO1 strain ortholog predictions obtained from
http://pseudomonas.com on Oct. 10 2016.
It uses genes in PAO1 strain as query and finds
orthologs hit in other P.a. strains.
Usage
PAO1orthologs
Format
A data.frame (tibble) with 392139 rows and 8 variables:
- Strain (Query)
Pseudomonas aeruginosa PAO1 (Reference)
- Locus Tag (Query)
Locus tag for PAO1
- Description (Query)
Description of the PAO1 gene
- Strain (Hit)
Ortholog hit strain
- Locus Tag (Hit)
Locus tag of the hit ortholog
- Description (Hit)
Description of the hit ortholog
- Percent Identity
Percentage of sequence identity
- Alignment Length
Alignment length
...
Source
greenelab/ADAGEpath documentation built on May 25, 2022, 7:11 a.m.
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| PAO1orthologs | R Documentation |
Pseudomonas aeruginosa PAO1 strain orthologs
Description
Pseudomonas aeruginosa PAO1 strain ortholog predictions obtained from http://pseudomonas.com on Oct. 10 2016. It uses genes in PAO1 strain as query and finds orthologs hit in other P.a. strains.
Usage
PAO1orthologs
Format
A data.frame (tibble) with 392139 rows and 8 variables:
- Strain (Query)
Pseudomonas aeruginosa PAO1 (Reference)
- Locus Tag (Query)
Locus tag for PAO1
- Description (Query)
Description of the PAO1 gene
- Strain (Hit)
Ortholog hit strain
- Locus Tag (Hit)
Locus tag of the hit ortholog
- Description (Hit)
Description of the hit ortholog
- Percent Identity
Percentage of sequence identity
- Alignment Length
Alignment length
...
Source
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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