plot_signature_overlap: Signature overlap plot
In greenelab/ADAGEpath: ADAGE-based Signature Analysis
View source: R/process_signature.R
plot_signature_overlap R Documentation
Signature overlap plot
Description
Plots the overlap significance between all pairs of signatures using a heatmap.
Values in the heatmap represent the odds ratio in fisher exact test on how
significant two signatures overlap in their genes.
A higher odds ratio indicates a more significant overlap between genes
in two signatures. The diagonal is set to the highest odds ratio in the
selected signature pairs just for visualization purpose. The plot will be
difficult to see if including more than 50 selected_signatures
Usage
plot_signature_overlap(selected_signatures, model)
Arguments
selected_signatures
a vector storing names of signatures to include
in the plot
model
an ADAGE model to extract signatures from
greenelab/ADAGEpath documentation built on May 25, 2022, 7:11 a.m.
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View source: R/process_signature.R
| plot_signature_overlap | R Documentation |
Signature overlap plot
Description
Plots the overlap significance between all pairs of signatures using a heatmap. Values in the heatmap represent the odds ratio in fisher exact test on how significant two signatures overlap in their genes. A higher odds ratio indicates a more significant overlap between genes in two signatures. The diagonal is set to the highest odds ratio in the selected signature pairs just for visualization purpose. The plot will be difficult to see if including more than 50 selected_signatures
Usage
plot_signature_overlap(selected_signatures, model)
Arguments
selected_signatures |
a vector storing names of signatures to include in the plot |
model |
an ADAGE model to extract signatures from |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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