plot_activity_heatmap: Signature activity heatmap
In greenelab/ADAGEpath: ADAGE-based Signature Analysis

plot_activity_heatmap

R Documentation

Signature activity heatmap

Plots a heatmap showing signature activities in a dataset.

plot_activity_heatmap(activity, signatures = NULL, fix_color_range = TRUE,
  is_pathway = FALSE)

`activity`	a data.frame that stores the signature activities for each sample in a dataset. The first column is signature name and activity values start from the second column.
`signatures`	a character vector specifying which signatures to include in the heatmap (default: NULL, all signatures will be included).
`fix_color_range`	logical. If TRUE, fix the heatmap color range to the maximum activity range of the input activity. If FALSE, heatmap color range is determined by the activity ranges of the selected signatures. (default: TRUE)
`is_pathway`	logical, indicates whether the input activity stores pathway activity. If TRUE, figure margin is set to a larger value to better display pathway names, which are much longer than signature names.