prepare_marginal_matrix: Marginal significance matrix preparation
In greenelab/ADAGEpath: ADAGE-based Signature Analysis
View source: R/marginal_activity.R
prepare_marginal_matrix R Documentation
Marginal significance matrix preparation
Description
Converts the limma result on margianl activity into a signatureN * signatureN
matrix format.
Usage
prepare_marginal_matrix(marginal_limma_result)
Arguments
marginal_limma_result
a data.frame that stores the limma result table
returned by the build_limma() function when used on marginal activity.
It's rownames is in the format of "signature1-signature2".
Value
a matrix storing the adjusted p values from
the activation test when the effect of the column signature is removed from
the row signature. Values in the diagonal of the matrix are the activation
significance of signatures themselves.
greenelab/ADAGEpath documentation built on May 25, 2022, 7:11 a.m.
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View source: R/marginal_activity.R
| prepare_marginal_matrix | R Documentation |
Marginal significance matrix preparation
Description
Converts the limma result on margianl activity into a signatureN * signatureN matrix format.
Usage
prepare_marginal_matrix(marginal_limma_result)
Arguments
marginal_limma_result |
a data.frame that stores the limma result table returned by the build_limma() function when used on marginal activity. It's rownames is in the format of "signature1-signature2". |
Value
a matrix storing the adjusted p values from the activation test when the effect of the column signature is removed from the row signature. Values in the diagonal of the matrix are the activation significance of signatures themselves.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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