combine_geneset_outputs: Combining geneset outputs
In greenelab/ADAGEpath: ADAGE-based Signature Analysis
View source: R/geneset_activity.R
combine_geneset_outputs R Documentation
Combining geneset outputs
Description
Combines the signature geneset association output and the geneset limma
output.
Usage
combine_geneset_outputs(signature_geneset_association, geneset_limma_result)
Arguments
signature_geneset_association
a data.frame storing signatures and
their significantly enriched gene sets, returned by the function
annotate_signatures_with_genesets().
geneset_limma_result
a data.frame that stores the result table
returned by limma. It includes logFC, adj.P.Val, and other statistics for
each feature. The features are in the format "signature|geneset".
Value
a data.frame that stores both signature geneset association and
genesets' limma result.
greenelab/ADAGEpath documentation built on May 25, 2022, 7:11 a.m.
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View source: R/geneset_activity.R
| combine_geneset_outputs | R Documentation |
Combining geneset outputs
Description
Combines the signature geneset association output and the geneset limma output.
Usage
combine_geneset_outputs(signature_geneset_association, geneset_limma_result)
Arguments
signature_geneset_association |
a data.frame storing signatures and their significantly enriched gene sets, returned by the function annotate_signatures_with_genesets(). |
geneset_limma_result |
a data.frame that stores the result table returned by limma. It includes logFC, adj.P.Val, and other statistics for each feature. The features are in the format "signature|geneset". |
Value
a data.frame that stores both signature geneset association and genesets' limma result.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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