one_signature: One signature extraction
In greenelab/ADAGEpath: ADAGE-based Signature Analysis
View source: R/process_signature.R
one_signature R Documentation
One signature extraction
Description
Extracts a single gene signature from an ADAGE model.
Usage
one_signature(node_weight, geneID, side, HW_cutoff = 2.5)
Arguments
node_weight
a vector storing weight values of each gene to a node
geneID
gene identifiers correspond to the weight vector
side
character, "pos" or "neg"
HW_cutoff
number of standard deviations from mean in a node's weight
distribution to be considered as high-weight (default to 2.5).
Value
a character vector storing genes in the signature defined by the
weight vector and the side.
greenelab/ADAGEpath documentation built on May 25, 2022, 7:11 a.m.
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View source: R/process_signature.R
| one_signature | R Documentation |
One signature extraction
Description
Extracts a single gene signature from an ADAGE model.
Usage
one_signature(node_weight, geneID, side, HW_cutoff = 2.5)
Arguments
node_weight |
a vector storing weight values of each gene to a node |
geneID |
gene identifiers correspond to the weight vector |
side |
character, "pos" or "neg" |
HW_cutoff |
number of standard deviations from mean in a node's weight distribution to be considered as high-weight (default to 2.5). |
Value
a character vector storing genes in the signature defined by the weight vector and the side.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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