annotate_shared_signatures: Shared signature annotation
In greenelab/ADAGEpath: ADAGE-based Signature Analysis
View source: R/visualize_network.R
annotate_shared_signatures R Documentation
Shared signature annotation
Description
Annotates shared signatures for gene pairs in the input gene_network_edge
data.frame.
Usage
annotate_shared_signatures(gene_network_edge, signatures_genes)
Arguments
gene_network_edge
a data.frame specifying gene-gene connections
in a gene-gene network. The first two columns are "to" and "from" geneIDs.
It is an intermediate product from the visualize_gene_network() function.
signatures_genes
a named list with each element storing genes in one
signature.
Value
the data.frame gene_network_edge with one more column
shared_signatures that specifies the shared signatures of the from and to
genes.
greenelab/ADAGEpath documentation built on May 25, 2022, 7:11 a.m.
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View source: R/visualize_network.R
| annotate_shared_signatures | R Documentation |
Shared signature annotation
Description
Annotates shared signatures for gene pairs in the input gene_network_edge data.frame.
Usage
annotate_shared_signatures(gene_network_edge, signatures_genes)
Arguments
gene_network_edge |
a data.frame specifying gene-gene connections in a gene-gene network. The first two columns are "to" and "from" geneIDs. It is an intermediate product from the visualize_gene_network() function. |
signatures_genes |
a named list with each element storing genes in one signature. |
Value
the data.frame gene_network_edge with one more column shared_signatures that specifies the shared signatures of the from and to genes.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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