plot_volcano: Signature volcano plot
In greenelab/ADAGEpath: ADAGE-based Signature Analysis

plot_volcano

R Documentation

Signature volcano plot

Makes a volcano plot that shows the activity difference and significance of each signature after testing them with build_limma().

plot_volcano(limma_result, highlight_signatures = NULL, interactive = FALSE)

`limma_result`	a data.frame that stores the limma result table returned by the build_limma() function. It should have rownames that specifies the name of each feature.
`highlight_signatures`	a character, if provided, signatures in it will be labeled and colored in red in the volcano plot (default: NULL).
`interactive`	logical, whether the volcano plot should be interactive. If TRUE, the plot is made using plotly. (default: FALSE)