TDM_RNAseq: RNAseq data normalization with TDM

Description Usage Arguments Value See Also

View source: R/load_data.R

Description

Performs Training Distribution Matching (TDM) on the input RNAseq data to normalize RNAseq expression values to a comparable range of the reference microarray data.

Usage

1
TDM_RNAseq(input_data, ref_data)

Arguments

input_data

a data.frame with gene IDs in the first column and expression values from the second column.

ref_data

a data.frame storing gene expression values of a compendium built from microarray data. It is used as the reference data in TDM.

Value

a data.frame storing TDM normalized gene expression values from the input_data.

See Also

https://github.com/greenelab/TDM


greenelab/ADAGEpath documentation built on Sept. 24, 2017, 2:35 a.m.