remove_redundant_signatures: Redundant signature removal
In greenelab/ADAGEpath: ADAGE-based Signature Analysis
View source: R/marginal_activity.R
remove_redundant_signatures R Documentation
Redundant signature removal
Description
Removes signatures whose activity changes are no longer significant after
removing genes overlapped with another signature.
Usage
remove_redundant_signatures(marginal_limma_result, sig_cutoff = 0.05)
Arguments
marginal_limma_result
a data.frame that stores the limma result table
returned by the build_limma() function when used on marginal activity.
It's rownames is in the format of "signature1-signature2".
sig_cutoff
a numeric value used as the significance cutoff.
(default: 0.05)
Value
a vector storing remaining signatures after removing redundant oens.
greenelab/ADAGEpath documentation built on May 25, 2022, 7:11 a.m.
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View source: R/marginal_activity.R
| remove_redundant_signatures | R Documentation |
Redundant signature removal
Description
Removes signatures whose activity changes are no longer significant after removing genes overlapped with another signature.
Usage
remove_redundant_signatures(marginal_limma_result, sig_cutoff = 0.05)
Arguments
marginal_limma_result |
a data.frame that stores the limma result table returned by the build_limma() function when used on marginal activity. It's rownames is in the format of "signature1-signature2". |
sig_cutoff |
a numeric value used as the significance cutoff. (default: 0.05) |
Value
a vector storing remaining signatures after removing redundant oens.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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