geneinfo: Gene information
In greenelab/ADAGEpath: ADAGE-based Signature Analysis
geneinfo R Documentation
Gene information
Description
Pseudomonas aeruginosa gene information curated by NCBI.
It was downloaded from NCBI ftp on Oct. 7 2016. It is used for
mapping PA numbers (LocusTag) to gene Symbol.
Usage
geneinfo
Format
A data.frame (tibble) with 5698 rows and 15 variables:
- #tax_id
a numeric vector, taxonomic id of P. aeruginosa
GeneIDa numeric vector, unique gene identifiers
Symbola character vector, gene symbols or gene names
LocusTaga character vector, locus tags or PA numbers
Synonymsa numeric vector
dbXrefsa character vector
chromosomea numeric vector
map_locationa numeric vector
descriptiona character vector
type_of_genea character vector
Symbol_from_nomenclature_authoritya numeric vector
Full_name_from_nomenclature_authoritya numeric vector
Nomenclature_statusa numeric vector
Other_designationsa numeric vector
Modification_datea numeric vector
Source
greenelab/ADAGEpath documentation built on May 25, 2022, 7:11 a.m.
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| geneinfo | R Documentation |
Gene information
Description
Pseudomonas aeruginosa gene information curated by NCBI. It was downloaded from NCBI ftp on Oct. 7 2016. It is used for mapping PA numbers (LocusTag) to gene Symbol.
Usage
geneinfo
Format
A data.frame (tibble) with 5698 rows and 15 variables:
- #tax_id
a numeric vector, taxonomic id of P. aeruginosa
GeneIDa numeric vector, unique gene identifiers
Symbola character vector, gene symbols or gene names
LocusTaga character vector, locus tags or PA numbers
Synonymsa numeric vector
dbXrefsa character vector
chromosomea numeric vector
map_locationa numeric vector
descriptiona character vector
type_of_genea character vector
Symbol_from_nomenclature_authoritya numeric vector
Full_name_from_nomenclature_authoritya numeric vector
Nomenclature_statusa numeric vector
Other_designationsa numeric vector
Modification_datea numeric vector
Source
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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