calculate_marginal_activity: Marginal activity calculation
In greenelab/ADAGEpath: ADAGE-based Signature Analysis
View source: R/marginal_activity.R
calculate_marginal_activity R Documentation
Marginal activity calculation
Description
Calculates the marginal activities between every two combinations of the input
signatures. Marginal activity is defined as the activity of a signature
after removing genes that it overlaps with another signature.
Usage
calculate_marginal_activity(input_data, selected_signatures, model)
Arguments
input_data
a data.frame with gene IDs in the first column and
expression values from the second column.
selected_signatures
a vector storing names of selected signatures
model
an ADAGE model to extract signatures from
Value
a data.frame storing marginal activities for the input samples.
Its rownames is set as "signature1-signature2",
indicating a marginal activity for signature1 after
removing the effect of signature2. If rowname is "signature1-signature1",
then it's the activity of signature1 itself.
greenelab/ADAGEpath documentation built on May 25, 2022, 7:11 a.m.
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View source: R/marginal_activity.R
| calculate_marginal_activity | R Documentation |
Marginal activity calculation
Description
Calculates the marginal activities between every two combinations of the input signatures. Marginal activity is defined as the activity of a signature after removing genes that it overlaps with another signature.
Usage
calculate_marginal_activity(input_data, selected_signatures, model)
Arguments
input_data |
a data.frame with gene IDs in the first column and expression values from the second column. |
selected_signatures |
a vector storing names of selected signatures |
model |
an ADAGE model to extract signatures from |
Value
a data.frame storing marginal activities for the input samples. Its rownames is set as "signature1-signature2", indicating a marginal activity for signature1 after removing the effect of signature2. If rowname is "signature1-signature1", then it's the activity of signature1 itself.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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