annotate_genes_in_signatures: Annotating genes in signatures

In greenelab/ADAGEpath: ADAGE-based Signature Analysis

Annotating genes in signatures

Description

Annotates genes in the input signatures with their symbols, descriptions, operons, associated signatures, and curated pathways if provided.

Usage

annotate_genes_in_signatures(selected_signatures, model,
  curated_pathways = NULL)

Arguments

selected_signatures	a character vector storing names of signatures
model	an ADAGE model to extract signatures from
curated_pathways	a named list with each element being a gene set, such as the output of the function fetch_geneset(). (default: NULL).

Value

a data.frame storing genes in the input signatures. Each gene is annotated by gene symbol, gene description, its operon, and signatures it is in.

greenelab/ADAGEpath documentation built on May 25, 2022, 7:11 a.m.