corMatrixC: Estimates local gene-gene correlations in a sequence of...
In hms-dbmi/crestree: Analysis of branching branching trajectories from single-cell data

Estimates local gene-gene correlations in a sequence of windows along pseudotime for locally permuted matrix

1 2	corMatrixC(genes, cells, cdnormX, step, w, permutN, n.cores = parallel::detectCores()/2)

`genes`	a set of genes to estimate local pairwise expression correlations
`cells`	cells ordered by pseudotime
`cdnormX`	expression matrix
`step`	step between sequential windows (in number of cells)
`w`	window length along pseudotime (in number of cells)
`permutN`	number of local permutations
`n.cores`	number of cores to use

local multiple permuted gene-gene correlation matrices per each window of cells

hms-dbmi/crestree documentation built on July 11, 2019, 8:04 p.m.

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