lambda.explore: Explore lambda

In hms-dbmi/crestree: Analysis of branching branching trajectories from single-cell data

Description

Explores multiple lambda and choose the optimal

Usage

lambda.explore(X = NA, M = ncol(X), sigma = 0.1, emb = NA,
  metrics = "cosine", tips.min = 2, tips.max = 10, base = 2,
  lambda.init = 100, err.cut = 0.005, n.steps = 40, p.power = 1)

Arguments

X	gene (rows) vs cell (columns) expression matrix
M	number of principal points in pptree modeling
sigma	fixed parameter sigma used in pptree modeling
emb	embdedding to visalize cells and principal tree together. If emb is given than pptrees for a range of lambda are shown

hms-dbmi/crestree documentation built on July 11, 2019, 8:04 p.m.