activity.lasso: Predict regulatory impact (activity) of transcription factors
In hms-dbmi/crestree: Analysis of branching branching trajectories from single-cell data
Description
Usage
Arguments
Value
View source: R/crestree.functions.R
Description
Predict regulatory impact (activity) of transcription factors
Usage
1
activity.lasso(em, motmat, perm = FALSE, n.cores = 1)
Arguments
em
matrix of expression levels
motmat
matrix of target-TF scores
perm
boolean, do permutations if TRUE.
n.cores
number of cores to use
Value
matrix of predited TF activities in cells.
hms-dbmi/crestree documentation built on July 11, 2019, 8:04 p.m.
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Description Usage Arguments Value
View source: R/crestree.functions.R
Description
Predict regulatory impact (activity) of transcription factors
Usage
1 | activity.lasso(em, motmat, perm = FALSE, n.cores = 1)
|
Arguments
em |
matrix of expression levels |
motmat |
matrix of target-TF scores |
perm |
boolean, do permutations if TRUE. |
n.cores |
number of cores to use |
Value
matrix of predited TF activities in cells.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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