slide.cells: Assign cells in a probabilistic manner to non-intersecting...

In hms-dbmi/crestree: Analysis of branching branching trajectories from single-cell data

Description

Assign cells in a probabilistic manner to non-intersecting windows along pseudotime

Usage

slide.cells(r, root, leaves, wind = 50, mapping = TRUE,
  regions = NULL, n.cores = parallel::detectCores()/2)

Arguments

r	ppt tree
root	root of progenitor branch of bifurcation
leaves	leaves of derivative branches of bifurcation
wind	number of cell per local pseudotime window
mapping	boolean, if project cells onto tree pseudotime in a probabilistic manner. TRUE by default.
regions	manually assign coordinates of windows
n.cores	number of cores to use

Value

a list of cell probabilisties of being in each local pseudotime window

hms-dbmi/crestree documentation built on July 11, 2019, 8:04 p.m.