synchro.path: Estimates pseudotime trends of local intra- and inter-module...

In hms-dbmi/crestree: Analysis of branching branching trajectories from single-cell data

Description

Estimates pseudotime trends of local intra- and inter-module correlations of fates-specific modules along a single trajectory

Usage

synchro.path(r, mat, genesetA, genesetB, w, step,
  n.mapping = length(r$cell.info), subtree, perm = FALSE)

Arguments

mat	expression matrix
genesetA	a vector of fate-specific genes for first post-bifurcation branch
genesetB	a vector of fate-specific genes for second post-bifurcation branch
w	local window, in number of cells, to estimate correlations
step	step, in number of cells, between local windows
subtree	trajectory, consisting of a vector of segments comprising trajectory
perm	boolean, estimate control trends for local permutations instread of real expression matrix
ppt	ppt object

Value

estimate of local correlation trends along trajectory

hms-dbmi/crestree documentation built on July 11, 2019, 8:04 p.m.