setroot: Orient the tree by setting up the root
In hms-dbmi/crestree: Analysis of branching branching trajectories from single-cell data
Description
Usage
Arguments
Value
View source: R/crestree.functions.R
Description
Assign root, pseudotime and segment to each principal point of the tree
Usage
1
Arguments
r
pptree object
root
root principal point (plotppt(tips=TRUE,..) can be used to visualize candidate tips for a root)
Value
modified ppt.tree object with new fields r$pp.info (estimated pseudotime and branch of principal points), r$pp.segments (segments information), r$root (root id).
hms-dbmi/crestree documentation built on July 11, 2019, 8:04 p.m.
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Description Usage Arguments Value
View source: R/crestree.functions.R
Description
Assign root, pseudotime and segment to each principal point of the tree
Usage
1 |
Arguments
r |
pptree object |
root |
root principal point (plotppt(tips=TRUE,..) can be used to visualize candidate tips for a root) |
Value
modified ppt.tree object with new fields r$pp.info (estimated pseudotime and branch of principal points), r$pp.segments (segments information), r$root (root id).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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