fit.ts: Model gene expression levels as a brancing spline function of...

In hms-dbmi/crestree: Analysis of branching branching trajectories from single-cell data

Description

Model gene expression levels as a brancing spline function of tree positions.

Usage

fit.ts(r, X, n.map, n.cores = parallel::detectCores()/2, gamma = 1.5,
  knn = 1)

Arguments

r	pptree object
X	expressinon matrix of genes (rows) vs cells (columns)
n.map	number of probabilistic cell-to-tree mappings to use
gamma	stringency of penalty.
knn	use expression averaging among knn cells

Value

matrix of fitted gene expression levels to the tree

hms-dbmi/crestree documentation built on July 11, 2019, 8:04 p.m.