visualise.trajectory: Visualize branching trajectories of a particular gene.

In hms-dbmi/crestree: Analysis of branching branching trajectories from single-cell data

Description

Visualize branching trajectories of a particular gene.

Usage

visualise.trajectory(r, gene, X, cex.cell = 0.3, cex.lab = 2,
  cex.axis = 1.5, cex.main = 1, lwd.erbar = 0, lwd.t1 = 3,
  lwd.t2 = 0.2, switch.point = NA, subtree = NA)

Arguments

r	pptree object
gene	gene name
X	matrix with a single row containing a gene expression levels (could be a vector of gene's expression). Columns of X reflect gene names.
cex.cell	size of cells
cex.lab	size of axis titles
cex.axis	size of axis labels
cex.main	size of title showing a gene name
lwd.erbar	width of error bars for uncertainty of cell pseudotime assignment
lwd.t1	width of the main branching trajectory
lwd.t2	width of ensemble trajectories, typically thiner than that of main trajectory.
subtree	visualise trajectory along a given subtree

hms-dbmi/crestree documentation built on July 11, 2019, 8:04 p.m.