cleanup.branches: Remove spurious branches of pptree
In hms-dbmi/crestree: Analysis of branching branching trajectories from single-cell data
Description
Usage
Arguments
Value
View source: R/crestree.functions.R
Description
Remove spurious branches of pptree
Usage
1
cleanup.branches(r, tips.remove = NULL, min.branch.length = 3)
Arguments
r
ppt.tree result
tips.remove
vector of tips indices to remove
min.branch.length
remove all branches with length less or equal than min.branch.length principal points
tips.number
select and retain only fixed number of tips (tips.number) that explain the most cell-cell variation.
Value
modified ppt.tree object with cleaned up structure
hms-dbmi/crestree documentation built on July 11, 2019, 8:04 p.m.
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Description Usage Arguments Value
View source: R/crestree.functions.R
Description
Remove spurious branches of pptree
Usage
1 | cleanup.branches(r, tips.remove = NULL, min.branch.length = 3)
|
Arguments
r |
ppt.tree result |
tips.remove |
vector of tips indices to remove |
min.branch.length |
remove all branches with length less or equal than min.branch.length principal points |
tips.number |
select and retain only fixed number of tips (tips.number) that explain the most cell-cell variation. |
Value
modified ppt.tree object with cleaned up structure
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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