project.cells.onto.ppt: Project cells onto the principal tree
In hms-dbmi/crestree: Analysis of branching branching trajectories from single-cell data
Description
Usage
Arguments
Value
View source: R/crestree.functions.R
Description
Project cells onto the principal tree
Usage
1
project.cells.onto.ppt(r, emb = NULL, n.mapping = 1)
Arguments
r
pptree object
emb
if not NULL than cell branch assignment and color code of branches are shown
n.mapping
number of probabilistic mapping of cells onto the tree to use. If n.mapping=1 then likelihood cell mapping is used.
Value
modified pptree object with new fields r$cell.summary, r$cell.info and r$img.list. r$cell.summary contains information about cells projected onto the tree, including pseudotime and branch.
hms-dbmi/crestree documentation built on July 11, 2019, 8:04 p.m.
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Description Usage Arguments Value
View source: R/crestree.functions.R
Description
Project cells onto the principal tree
Usage
1 | project.cells.onto.ppt(r, emb = NULL, n.mapping = 1)
|
Arguments
r |
pptree object |
emb |
if not NULL than cell branch assignment and color code of branches are shown |
n.mapping |
number of probabilistic mapping of cells onto the tree to use. If n.mapping=1 then likelihood cell mapping is used. |
Value
modified pptree object with new fields r$cell.summary, r$cell.info and r$img.list. r$cell.summary contains information about cells projected onto the tree, including pseudotime and branch.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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