plotpptl: Visualize list of pptree objects onto embedding

In hms-dbmi/crestree: Analysis of branching branching trajectories from single-cell data

Description

Projects pptree objects onto embedding (e.g. tSNE)

Usage

plotpptl(rl, emb, cols = adjustcolor(1, alpha = 0.3), alpha = 1,
  lwd = 1, ...)

Arguments

rl	list of pptree objects (as calculated using bootstrap.tree or mppt.tree)
emb	(x,y) coordinates data frame (e.g Rtsne $Y result)
cols	vector of colors for cells in emb.

hms-dbmi/crestree documentation built on July 11, 2019, 8:04 p.m.